View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12273_high_9 (Length: 313)
Name: NF12273_high_9
Description: NF12273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12273_high_9 |
 | |
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| [»] scaffold0302 (1 HSPs) |
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| [»] scaffold0084 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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| [»] scaffold0100 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 21370737 - 21370453
Alignment:
| Q |
11 |
cagagacttaaaagtgatattccaagcttccacggcttgtggacaatcaacagaatggaaattgggtgagagggacgcaacaactggaaggagattcgtt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21370737 |
cagagacttaaaagtgatattccaagcttccacggcttgtggacaatcaacagaatggaaattgggtgagagggacgcaacaactggaaggagattcgtt |
21370638 |
T |
|
| Q |
111 |
atcattggaagagatagtggtacagttggatcatttggtaacttctttaagattgtggaaactgcagttagaaatatctataacatccaatggtgcccta |
210 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21370637 |
atcattggaagagatagtggtacagttggatcctttggtaacttctttaagattgtagaaactgcagttagaaatatctataacattcaatggtgcccta |
21370538 |
T |
|
| Q |
211 |
cagaagtgtgtcccaattgtaagtttgaatgtgggactgttggtattgttcgtgagaatggtaagattttgttggctcttgatgg |
295 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21370537 |
cagaagtgtgtcccaattgtaagtttgaatgtgggactgttggtattgttcgtgagaatggtaagattttgttggctcttgatgg |
21370453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 21403978 - 21403693
Alignment:
| Q |
10 |
gcagagacttaaaagtgatattccaagcttccacggcttgtggacaatcaacagaatggaaattgggtgagagggacgcaacaactggaaggagattcgt |
109 |
Q |
| |
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|||||||||||| ||||||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||| || ||| | |
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| T |
21403978 |
gcagagacttaagagtgatattccaagcaggcacgagctgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcat |
21403879 |
T |
|
| Q |
110 |
tatcattggaagagatagtggtacagttggatcatttggtaacttctttaagattgtggaaactgcagttagaaatatctataacatccaatggtgccct |
209 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||| |||||||||||||| ||||||| ||||| || |||| ||||| ||||||||||||||| ||| |
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| T |
21403878 |
tatcaccggaagagatgatagtacagttggatcatatggtaacttctttaggattgtgcaaactccaagtagaggtatctttaacatccaatggtgtcct |
21403779 |
T |
|
| Q |
210 |
acagaagtgtgtcccaattgtaagtttgaatgtgggactgttggtattgttcgtgagaatggtaagattttgttggctcttgatgg |
295 |
Q |
| |
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||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
21403778 |
acagaggtgtgtccaagttgtaagtttgaatgtgggactgttggtattgttcgtgagaatggtaagattctgttagctcttgatgg |
21403693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 21798470 - 21798185
Alignment:
| Q |
10 |
gcagagacttaaaagtgatattccaagcttccacggcttgtggacaatcaacagaatggaaattgggtgagagggacgcaacaactggaaggagattcgt |
109 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||| || ||| | |
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| T |
21798470 |
gcagagacttaagagtgatattccaagcaggcacgagctgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcat |
21798371 |
T |
|
| Q |
110 |
tatcattggaagagatagtggtacagttggatcatttggtaacttctttaagattgtggaaactgcagttagaaatatctataacatccaatggtgccct |
209 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||| |||||||||||||| ||||||| ||||| || |||| ||||| ||||||||||||||| ||| |
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| T |
21798370 |
tatcaccggaagagatgatagtacagttggatcatatggtaacttctttaggattgtgcaaactccaagtagaggtatctttaacatccaatggtgtcct |
21798271 |
T |
|
| Q |
210 |
acagaagtgtgtcccaattgtaagtttgaatgtgggactgttggtattgttcgtgagaatggtaagattttgttggctcttgatgg |
295 |
Q |
| |
|
||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
21798270 |
acagaggtgtgtccaagttgtaagtttgaatgtgggactgttggtattgttcgtgagaatggtaagattctgttagctcttgatgg |
21798185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 297
Target Start/End: Complemental strand, 21934594 - 21934344
Alignment:
| Q |
47 |
ttgtggacaatcaacagaatggaaattgggtgagagggacgcaacaactggaaggagattcgttatcattggaagagatagtggtacagttggatcattt |
146 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||||| ||| | | | |||||| || || |||||| ||| | |||||||| ||| |||||||| | |
|
|
| T |
21934594 |
ttgtgtacaatcaacagaatggagattaggtgagaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatat |
21934495 |
T |
|
| Q |
147 |
ggtaacttctttaagattgtggaaactgcagttagaaatatctataacatccaatggtgccctacagaagtgtgtcccaattgtaagtttgaatgtggga |
246 |
Q |
| |
|
||||||||||||| |||||| || || || || | ||| ||||| || |||||||| |||||||| || ||||| | |||||| ||||||||||| | |
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| T |
21934494 |
ggtaacttctttaggattgtagagaccccacttgaaggtatgtataatatacaatggtgtcctacagaggtatgtccaagttgtaaatttgaatgtggaa |
21934395 |
T |
|
| Q |
247 |
ctgttggtattgttcgtgagaatggtaagattttgttggctcttgatggtg |
297 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||||| || ||||||| |
|
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| T |
21934394 |
ctgttgatatgttgaatgagaatggtaagattttgttggccctagatggtg |
21934344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 47 - 295
Target Start/End: Original strand, 44442839 - 44443087
Alignment:
| Q |
47 |
ttgtggacaatcaacagaatggaaattgggtgagagggacgcaacaactggaaggagattcgttatcattggaagagatagtggtacagttggatcattt |
146 |
Q |
| |
|
|||||| || ||| ||||||||| ||| || |||||||||||||| | ||| ||||| | ||| || ||||||||| ||||||||||||||||||| |
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| T |
44442839 |
ttgtgggcagtcatcagaatggagattaggcgagagggacgcaacgagtggtaggaggcttattaccaccggaagagatgatggtacagttggatcattt |
44442938 |
T |
|
| Q |
147 |
ggtaacttctttaagattgtggaaactgcagttagaaatatctataacatccaatggtgccctacagaagtgtgtcccaattgtaagtttgaatgtggga |
246 |
Q |
| |
|
||||||||||||| ||||||| | | | | |||||||||||||||||||||||||| ||||||||| || | ||| |||||||||||||| |
|
|
| T |
44442939 |
ggtaacttctttaggattgtgcagagccaaactcttggtatctataacatccaatggtgccctagagaagtgtgccctagctgttggtttgaatgtggga |
44443038 |
T |
|
| Q |
247 |
ctgttggtattgttcgtgagaatggtaagattttgttggctcttgatgg |
295 |
Q |
| |
|
|| |||||||| ||||||||||||| |||| ||| ||||| |||||||| |
|
|
| T |
44443039 |
ctattggtattattcgtgagaatggcaagagtttattggcccttgatgg |
44443087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 4286927 - 4287039
Alignment:
| Q |
185 |
tatctataacatccaatggtgccctacagaagtgtgtcccaattgtaagtttgaatgtgggactgttggtattgttcgtgagaatggtaagattttgttg |
284 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | ||| || | ||||||| || ||||||||||||||||| || ||||||||||||| |||||| ||||| |
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|
| T |
4286927 |
tatctataacattcaatggtgccctacagaggcgtgccctagttgtaaggttcaatgtgggactgttggtgttattcgtgagaatggcaagattctgttg |
4287026 |
T |
|
| Q |
285 |
gctcttgatggtg |
297 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
4287027 |
gcccttgatggtg |
4287039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 4295398 - 4295510
Alignment:
| Q |
185 |
tatctataacatccaatggtgccctacagaagtgtgtcccaattgtaagtttgaatgtgggactgttggtattgttcgtgagaatggtaagattttgttg |
284 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | ||| || | ||||||| || ||||||||||||||||| || ||||||||||||| |||||| | ||| |
|
|
| T |
4295398 |
tatctataacattcaatggtgccctacagaggcgtgccctagttgtaaggttcaatgtgggactgttggtgttattcgtgagaatggcaagattcttttg |
4295497 |
T |
|
| Q |
285 |
gctcttgatggtg |
297 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
4295498 |
gcgcttgatggtg |
4295510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 297
Target Start/End: Complemental strand, 14918 - 14809
Alignment:
| Q |
188 |
ctataacatccaatggtgccctacagaagtgtgtcccaattgtaagtttgaatgtgggactgttggtattgttcgtgagaatggtaagattttgttggct |
287 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| || ||||||||| | ||||||| ||||||||| || |||| |||||||| |||||||||||||| |
|
|
| T |
14918 |
ctataacattcaatggtgccctacagaggtgtgccctaattgtaagaatcaatgtggaactgttggtcttattcgcgagaatggaaagattttgttggcc |
14819 |
T |
|
| Q |
288 |
cttgatggtg |
297 |
Q |
| |
|
|| ||||||| |
|
|
| T |
14818 |
ctcgatggtg |
14809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 296
Target Start/End: Original strand, 17394 - 17502
Alignment:
| Q |
188 |
ctataacatccaatggtgccctacagaagtgtgtcccaattgtaagtttgaatgtgggactgttggtattgttcgtgagaatggtaagattttgttggct |
287 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||||| || | |||||| || ||||||||||||||||| || ||||||||||||| |||||||||||||| |
|
|
| T |
17394 |
ctataacattcaatggtgccctaaagaggtgtgccctagttgtaatattcaatgtgggactgttggtgttattcgtgagaatggcaagattttgttggcc |
17493 |
T |
|
| Q |
288 |
cttgatggt |
296 |
Q |
| |
|
|| |||||| |
|
|
| T |
17494 |
ctcgatggt |
17502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 25935 - 25837
Alignment:
| Q |
188 |
ctataacatccaatggtgccctacagaagtgtgtcccaattgtaagtttgaatgtgggactgttggtattgttcgtgagaatggtaagattttgttggc |
286 |
Q |
| |
|
||||||||| |||||||| |||| ||| ||||| || | |||||| || ||||||||||||||||| || ||||||||||||| |||||||||||||| |
|
|
| T |
25935 |
ctataacattcaatggtgtcctaaagaggtgtgccctagttgtaatattcaatgtgggactgttggtgttattcgtgagaatggcaagattttgttggc |
25837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 300
Target Start/End: Original strand, 34181 - 34293
Alignment:
| Q |
188 |
ctataacatccaatggtgccctacagaagtgtgtcccaattgtaagtttgaatgtgggactgttggtattgttcgtgagaatggtaagattttgttggct |
287 |
Q |
| |
|
||||||||| || |||||||||||||| | ||||| | ||||||| | ||||||||||||||||| || |||| |||||||| |||| | ||||||| |
|
|
| T |
34181 |
ctataacattcagtggtgccctacagaggcttgtccaagttgtaaggtacaatgtgggactgttggtgttattcgcgagaatggcaagaatctgttggcc |
34280 |
T |
|
| Q |
288 |
cttgatggtgatg |
300 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34281 |
cttgatggtgatg |
34293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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