View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12273_low_1 (Length: 617)
Name: NF12273_low_1
Description: NF12273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12273_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 14 - 549
Target Start/End: Complemental strand, 38650324 - 38649789
Alignment:
| Q |
14 |
agatagcaaataaagaaagagaatagaaagcttacaggaataaaatcagcagggttttctttgatggacggaatctcatatattgccttatagcagcggc |
113 |
Q |
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| T |
38650324 |
agatagcaaataaagaaagagaatagaaagctgacaggaataaaatcagcagggttttctttgatggacggaatctcatatattgccttatagcagcggc |
38650225 |
T |
|
| Q |
114 |
aaatttcaagataatcattgttgtgggaataataccttacatgacagacaaaaaaccaaaataagnnnnnnnnnnngtttcaggatcagccgtaagaaat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||| | || |||||| ||||| | ||||| || |||||||||| ||||||||| |
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| T |
38650224 |
aaatttcaagataatcattgttgtgggaataatacctaaaat--cagacagaaaac-agcataaggaaaaaaaaaagt--caggatcagcagtaagaaat |
38650130 |
T |
|
| Q |
214 |
atcatgaaccccgtacttgaaaaatatgcagcatgaagataaaataaacatgcactcatctatatcg-tttcacagtcagtgaagtggtatagaagcatc |
312 |
Q |
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| T |
38650129 |
atcatgaaccacaaactagaaaaatatgtagcatgaagataaaataaacatgcactcatctatatcgatttcacagtcagtgaagtggtatagaagcatc |
38650030 |
T |
|
| Q |
313 |
aacccaagtttagaaagctaaggtatatttactgccacatatactccactgtgaccaattttttgctctacattgcaagagtgaaggctgcctacagtag |
412 |
Q |
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| T |
38650029 |
aacccaagtttagaaagctaaggtatatttactgccacatatactccactgtgaccaattttttgctctacattgcaagagtgaaggctgcctacagtag |
38649930 |
T |
|
| Q |
413 |
acccacaacaatggtttaaactttaaagcctttcttaaaccatgtcatgacaggagctttgtagcgccaggtttccctttac----acataattcaaatg |
508 |
Q |
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| T |
38649929 |
acccacaacaatggtttaaactttaaagcctttcttaaaccatgtcatgacaggagttttgtagcgccaggttgcccttcacacgtacataattcaaatg |
38649830 |
T |
|
| Q |
509 |
aacaggacttcaccacaaagcagcataaatataaatgacaa |
549 |
Q |
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| T |
38649829 |
aacaggactctacgacaaagcagcataaatataaatgacaa |
38649789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 38625278 - 38624962
Alignment:
| Q |
11 |
cagagatagcaaataaagaaagagaatagaaagcttacaggaataaaatcagcagggttttctttgatggacggaatctcatatattgccttatagcagc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38625278 |
cagagatagcaaataaagaaagagaatagaaagcttacaggaataaaatcagcagggttttctttgatggacggaatctcatatattgccttatagcagc |
38625179 |
T |
|
| Q |
111 |
ggcaaatttcaagataatcattgttgtgggaataataccttacatgacagacaaaaaaccaaaataagnnnnnnnnnnngtttcaggatcagccgtaaga |
210 |
Q |
| |
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| T |
38625178 |
ggcaaatttcaagataatcattgttgtgggaataataccttacatcacagacaaaaaaccaaaataag--aaaaaaaaagtttcaggatcagctgtaaga |
38625081 |
T |
|
| Q |
211 |
aatatcatgaaccccgtacttgaaaaatatgcagcatgaagataaaataaacatgcactcatctatatcg-tttcacagtcagtgaagtggtatagaagc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||| |
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| T |
38625080 |
aatatcatgaaccccgtacttgaaaaatatgcagcatgaagataaaataaacatgcactcatctatatggatttcacattcaatgaagtggtatagaagc |
38624981 |
T |
|
| Q |
310 |
atcaacccaagtttagaaa |
328 |
Q |
| |
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||| ||||||||||||||| |
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| T |
38624980 |
atcgacccaagtttagaaa |
38624962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 384 - 599
Target Start/End: Complemental strand, 38624827 - 38624620
Alignment:
| Q |
384 |
attgcaagagtgaaggctgcctacagtagacccacaacaatggtttaaactttaaagcctttcttaaaccatgtcatgacaggagctttgtagcgccagg |
483 |
Q |
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| T |
38624827 |
attgcaagaatgaaggcagcctacagtagacccacaa-aatggtgtaaa-------gcctttcttaaaccatgtcatgacaggagctttgtagcgccagg |
38624736 |
T |
|
| Q |
484 |
tttccctttacacataattcaaatgaacaggacttcaccacaaagcagcataaatataaatgacaattgataggaattgcaatgtttacaatctaaaatg |
583 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38624735 |
tttccctttacacataattcaaatgaacaggactccacaacaaagcagcataaatataaatgacaattgataggaattgcaatgtttacaatctaaaatg |
38624636 |
T |
|
| Q |
584 |
aaaataatagacttga |
599 |
Q |
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|||||||||||||||| |
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| T |
38624635 |
aaaataatagacttga |
38624620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 562
Target Start/End: Complemental strand, 38649792 - 38649753
Alignment:
| Q |
523 |
acaaagcagcataaatataaatgacaattgataggaattg |
562 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||||| |
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| T |
38649792 |
acaaagcagcataaatataaatgacaattgacaagaattg |
38649753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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