View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12273_low_12 (Length: 272)
Name: NF12273_low_12
Description: NF12273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12273_low_12 |
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| [»] scaffold0496 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 10879359 - 10879107
Alignment:
| Q |
18 |
tcttctttaatacctgaaggccagattgaatcaattgaaaccttgaatacatggttttaatgtattcatattcgctcattctaaagagcttatactggtt |
117 |
Q |
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| T |
10879359 |
tcttctttaatacctgaaggccagattgaatcaattgaaaccttgaatacatggttttaatgtattcatattcgctcattctaaagagcttatactggtt |
10879260 |
T |
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| Q |
118 |
taccaaatggttagccttagcttccgtaacctgttgatttccctcataagtcgagcacagagattcaaagatggttttggcagaggatttgttgacaatc |
217 |
Q |
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| T |
10879259 |
taccaaatggttagccttagcttccgtaacctgttgatttccctcataagtcgagcacagagattcaaagatggttttggcagaggatttgttgacaatc |
10879160 |
T |
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| Q |
218 |
ttcacatattttgagtaaggtatagcttctacaagacttccacgcaccctatg |
270 |
Q |
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| T |
10879159 |
ttcacatattttgagtaaggtatagcttctacaagacttccacgcaccctatg |
10879107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 13293071 - 13292987
Alignment:
| Q |
54 |
gaaaccttgaatacatggttttaatgtattcatattcgctcattctaaagagcttatactggtttaccaaatggttagccttagc |
138 |
Q |
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| T |
13293071 |
gaaaccttgaatacatggttttaatatcttcatctttcttcattttaaaaagctcatactgatgaactaactggttagccttagc |
13292987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 24278554 - 24278417
Alignment:
| Q |
52 |
ttgaaaccttgaatacatggttttaatgtattcatattcgctcattctaaagagcttatactggtttaccaaatggttagccttagcttccgtaacctgt |
151 |
Q |
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| T |
24278554 |
ttgaaaccttgagtacatgatttcaatatctccatcttccttcattctaaagagctcatattgatgtaccaattggttaactttagcttctttaacctgt |
24278455 |
T |
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| Q |
152 |
tgatttccctcataagtcgagcacagagattcaaagat |
189 |
Q |
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| T |
24278454 |
tggatcccttcataggtagagcacaaagattcaaagat |
24278417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 270
Target Start/End: Original strand, 10779 - 10956
Alignment:
| Q |
93 |
tcattctaaagagcttatactggtttaccaaatggttagccttagcttccgtaacctgttgatttccctcataagtcgagcacagagattcaaagatggt |
192 |
Q |
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| T |
10779 |
tcattctaaaaagctcatattgattaaccaattggttctccttggcttccctatcatgttggtttccttcatagatagagcacagagattcaaatatggt |
10878 |
T |
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| Q |
193 |
tttggcagaggatttgttgacaatcttcacatattttgagtaaggtatagcttctacaagacttccacgcaccctatg |
270 |
Q |
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| T |
10879 |
cttgacagtagacctattgacaatcttcaaatattctgaatgaggtagaacatctataagaattctatgcaccctatg |
10956 |
T |
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