View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12273_low_2 (Length: 573)
Name: NF12273_low_2
Description: NF12273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12273_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 11 - 556
Target Start/End: Complemental strand, 194335 - 193798
Alignment:
| Q |
11 |
cagagacccatagaatgaaaggattattaatcaaacatgagacaggtggattttgttgggagattatggtagggaggacttgtttcccaaccctctctag |
110 |
Q |
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| T |
194335 |
cagaaacccatggaatgaaaggattgttaatcaaacatgagacaggtggattttgttgggagattatggtagggaggacttgtttcccaaccatctctag |
194236 |
T |
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| Q |
111 |
ctgtggcaaatacacatccaagtcaagccgttttggttcattctcatcccaaccatcttcaaaccattcaaatctaataaatccttttcctatcacaact |
210 |
Q |
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| T |
194235 |
ttgtggcaaatacacatccaagtcaagccgttttggttcatcctcatcccaaccatcttcaaaccattcaaatctaataaatccttttcctatcacaact |
194136 |
T |
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| Q |
211 |
tccttctcttcttctaaatctctagcttttctcatctctttgccccagcttttctggtgtgcaaaaagtcactgccaaaccttttgaggccaacagcttc |
310 |
Q |
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| T |
194135 |
tccttctcttcttctaaatctctagcttttctcatctctttgccccagc-tttctagtgtgcaaaaagtcactgccaaaccttttgaggccaacagcttc |
194037 |
T |
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| Q |
311 |
cccagcctcaatagagggttcacgtgtccttgcgccgggaacgatacaacatacaaggaacacatgctctacaatatcattatcacaccccatttttcct |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
194036 |
cccagcctcaatagagggttcacgtgtccttgcgccgggaacg-------atacaaggaacacatgctctacaatatcattatcacaccccattttccct |
193944 |
T |
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| Q |
411 |
ttaatctcattcatctctcgtaatttgttaattaatttccgtgaatgatcagatgatatatatataataatctgagtggcatgtatgtactataataaag |
510 |
Q |
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| T |
193943 |
ttaatctcattcatctctcttaatttgttaattaatttccttgaatgatcagatgatatatatataataatctgagtggcatgtatgtactataataaag |
193844 |
T |
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| Q |
511 |
aatgttaggttgcaatctggatcaattggtgcactagaaagtcact |
556 |
Q |
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| T |
193843 |
aatgttaggttgcaatctggatcaattggtgcactagaaagtcact |
193798 |
T |
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