View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12273_low_3 (Length: 472)
Name: NF12273_low_3
Description: NF12273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12273_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 56 - 462
Target Start/End: Complemental strand, 29078428 - 29078022
Alignment:
| Q |
56 |
ttgtttaaattaatgtttatcgaaaaactgcaaataaacgtgcccttcacttgcaatatagtagtagttgagaaataacttgtagggttgtaattgtcat |
155 |
Q |
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| T |
29078428 |
ttgtttaaattaatgtttatagaaaaactgcaaataaacgtgcccttcacttgcaatatagtagtagttgagaaataacttgtagggttgtaattgtcaa |
29078329 |
T |
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| Q |
156 |
gaactatatacaatagaagcaaaccacgataagggaccatttctaaaaataatttcacaattataattagatagtgcaagtagatccaatttcaatttat |
255 |
Q |
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| T |
29078328 |
gaactatatacaatagaagcaaaccacgataagggaccatttctaaaaataatttcacaattataattagatagtgcaagtagatccaatttcaatttat |
29078229 |
T |
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| Q |
256 |
gcagctacagtataaatattggagctatctcaaactatttaatgaaagaaacaatatgggtcgttctgtctagtaggggaatatcatgaaatgggcttaa |
355 |
Q |
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| T |
29078228 |
gcagctacagtataaatattggagctatctcaaactatttaatgaaagaaacaatatgggtcgttctgtctagtaggggaatatcatgaaatgggcttaa |
29078129 |
T |
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| Q |
356 |
attaaaatcaaaatatgtgaccnnnnnnntgtccatataagggataggtggcacgtgtaattgttgtattgttgtgcttatggactgtcttatttgtctg |
455 |
Q |
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| T |
29078128 |
attaaaatcaaaatatgtgaccaaaaaaatgtccatataagggataggtggcacgtgtaattgttgtatggttgtgcttatggactgtcttatttgtctg |
29078029 |
T |
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| Q |
456 |
tgctgct |
462 |
Q |
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| T |
29078028 |
tgatgct |
29078022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29079763 - 29079700
Alignment:
| Q |
1 |
ggttaatatttttcgtatatatctctctctcagaaaacaaattcgtatatatcatttgtttaaa |
64 |
Q |
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| T |
29079763 |
ggttaatatttttcgtatatatctctccctcagaaaacaaattcatatatatcatttgtctaaa |
29079700 |
T |
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