View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12273_low_7 (Length: 354)
Name: NF12273_low_7
Description: NF12273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12273_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 43096400 - 43096722
Alignment:
| Q |
15 |
atattcaacactttattttatcactttctctatcttttcttatcacatctcaccgacgtatcaagattctacccttttttacttccatatatcttctaac |
114 |
Q |
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| T |
43096400 |
atattcaacactttattttatcactttctct--cttttcttatcacatc--accgacgtatcaggattctacacttttttacttccatatatcttctaac |
43096495 |
T |
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| Q |
115 |
cctttttcttctatcattgcatctcatttcaaggaccttgtgagaattggagtgcaaaaatggacaaaaaattggactagcaacaaaatggtattgagtg |
214 |
Q |
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| T |
43096496 |
cctttttcttctatcattgcatctcatttcaaggaccttgtgtgaattggagtgcaaaaatggacaaaaaattggactagcaacagaatggtattgagcg |
43096595 |
T |
|
| Q |
215 |
aaagccggcccgacttgtagcgaaagccacaagcattgtagagtgtttttggaccccttggccattcccgccattatggagtcttggttatatcacaatg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
43096596 |
aaagccggcccgacttgtagcgaaagccacaagcattgtagagtgtttttggaccccttggcccttccggccattatggagtcttggttatatcacaatg |
43096695 |
T |
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| Q |
315 |
cgtgcatttcctaacatgtatcaaagc |
341 |
Q |
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| T |
43096696 |
cgtgcatttcctaacatgtatcaaagc |
43096722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 125 - 330
Target Start/End: Complemental strand, 42714694 - 42714485
Alignment:
| Q |
125 |
ctatcattgcatctcatttcaaggacctt---gtgagaattggagtgcaaaaatggacaaaaaattggactagcaacaaaatggtattgagtgaaa-gcc |
220 |
Q |
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| T |
42714694 |
ctatccttgcatctcatttcaaggacctttttgtgcgaattggagtgcacagctggacaaaacgttggactagcagcaggccggtattcagggaaaagtc |
42714595 |
T |
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| Q |
221 |
ggcccgacttgtagcgaaagccacaagcattgtagagtgtttttggaccccttggccattcccgccattatggagtcttggttatatcacaatgcgtgca |
320 |
Q |
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|||| |||||||| |||| || ||||||||| ||||||||||||| ||| |||| | | ||| ||||| ||||||||||||||| ||||||||| |||| |
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| T |
42714594 |
ggccagacttgtaccgaacaccgcaagcattgcagagtgtttttggccccattggacctgccctccattgtggagtcttggttatctcacaatgcatgca |
42714495 |
T |
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| Q |
321 |
tttcctaaca |
330 |
Q |
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|||||||||| |
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| T |
42714494 |
tttcctaaca |
42714485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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