View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12273_low_8 (Length: 350)
Name: NF12273_low_8
Description: NF12273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12273_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 331
Target Start/End: Original strand, 43365261 - 43365581
Alignment:
| Q |
11 |
aacctgtgtaatgcaattaaatgttattcaatcatatggcatcaacacaacaataactagcatgttggacacctaacttacaatgttggaaccacaaatt |
110 |
Q |
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| T |
43365261 |
aacctgtgtaatgcaattaaatgttattcaatcatatggcatcaacacaacaataactagcatgttggacacctaacttacaatgttggaaccacaaatt |
43365360 |
T |
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| Q |
111 |
ttattaataaaattgaggcacacaattttgatgaaagcttccaattagggacctttaatgaaacacttacacgtttcttgatcagcactggtaaaacacg |
210 |
Q |
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| T |
43365361 |
ttattaataaaattgaggcacacaattttgatgaaagcttccaattagggacctttaattaaacacttacacgtttcttgatcagcactggtaaaacacg |
43365460 |
T |
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| Q |
211 |
accctcgtagcatttgggggtgcatttccttggaacacgcactgtatatggagtcgcaaatttctctcccatatttggtagttgctttacaactcttatg |
310 |
Q |
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| T |
43365461 |
accctcgtagcatttgggggtgcatttccttggaacacgcactgtatatggagtcgcaaatttctctcccatatttggtagttgctttacaactcttatg |
43365560 |
T |
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| Q |
311 |
tcattccggagggatgttata |
331 |
Q |
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| T |
43365561 |
tcattccggagggatgttata |
43365581 |
T |
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