View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12274_high_2 (Length: 607)
Name: NF12274_high_2
Description: NF12274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12274_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 595
Target Start/End: Original strand, 42650589 - 42651158
Alignment:
| Q |
16 |
cagatacaagtcaaaaggcgtatactaaatcttaaccattaaatcaaattaatcaaatggttcataaacgtctcctaaaagatgtatgtgagtccttttt |
115 |
Q |
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|||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42650589 |
cagatataagtcaaaagacttatatcaaatcttaaccattaaatcaaattaatcaaatggttcataaacgtctcctaaaagatgtatggaagtccttttt |
42650688 |
T |
|
| Q |
116 |
ctagtttttcacgggaacaagaaaattcccacattcgcaacaacttcaaagaaatgggattcaagcttctattgc-ttaattcttatggcttcttttcta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42650689 |
ctagtttttcacgggaacaagaaaattcccacattcacaacaacttcaaagaaatgggattcaagcttctattgctttaattcttatggcttcttttcta |
42650788 |
T |
|
| Q |
215 |
aatttcaattgcttaactcatatgccttaatttatttatacgaacccactcttctgactaagttgcttctatttcccttttattgcccatatgtttccaa |
314 |
Q |
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| T |
42650789 |
aatttcaattgcttaattcatatgccttaatttatttatacgaacccactcttgtgactaagttgcttc-----------tattgcccatttgtttccaa |
42650877 |
T |
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| Q |
315 |
cacatgtgcacaatgaaaacccccaactttggatccaagcttaattatatacggtttgttctctcacgatttattaatcaaaccaatgttatttccgtga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |
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| T |
42650878 |
cacatgtgcacaatgaaaacccccaactttggatccaagcttaattatatacggtttgttctgtcatgatttattgatcaaaccaatgttatttccgtga |
42650977 |
T |
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| Q |
415 |
aagaaagnnnnnnncttgactgcctcaaatctcaatcgcaaattaggttccaacttattcaaatttatttgannnnnnnnnnnnccatatcacgaaactc |
514 |
Q |
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| T |
42650978 |
gagaaagaaaaaaacttgactgcctcaaatctcaatcgcaaattaggttccaacttattcaaatttatttgattttttatttttccatatcacgaagctc |
42651077 |
T |
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| Q |
515 |
tatttcctcgatgaataacgtatgtgcagggaagaaaattgaggtttagccaaaaattgatcaaagattaagctgcacagg |
595 |
Q |
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| T |
42651078 |
tatttgctcgatgaataacgtatgtgcagggaagaaaagtgaggtttagccaaaaattgatcaaagattaagctgcacagg |
42651158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 42 - 213
Target Start/End: Original strand, 41564849 - 41565020
Alignment:
| Q |
42 |
aaatcttaaccattaaatcaaattaatcaaatggttcataaacgtctcctaaaagatgtatgtgagtcctttttctagtttttcacgggaacaagaaaat |
141 |
Q |
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||||||||||||||||||||||| ||| ||||||||| ||| || ||||||||| || ||||||||||| ||| | |||| ||| ||||||| ||||| |
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| T |
41564849 |
aaatcttaaccattaaatcaaatcaattcaatggttcacaaatgtttcctaaaaggtgcatgtgagtcctctttttcgtttgtcattggaacaaaaaaat |
41564948 |
T |
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| Q |
142 |
tcccacattcgcaacaacttcaaagaaatgggattcaagcttctattgcttaattcttatggcttcttttct |
213 |
Q |
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| T |
41564949 |
ccccagattcacaacagcttcaaagaaatcggatccaagcttctattgcttaattcatatggcttcttttct |
41565020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 19423768 - 19423828
Alignment:
| Q |
153 |
caacaacttcaaagaaatgggattcaagcttctattgcttaattcttatggcttcttttct |
213 |
Q |
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| T |
19423768 |
caacagcttcaaagaaatcggatccaagcttctattgcttaattcatatggcttcttttct |
19423828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 19405371 - 19405440
Alignment:
| Q |
42 |
aaatcttaaccattaaatcaaattaatcaaatggttcataaacgtctcctaaaagatgtatgtgagtcct |
111 |
Q |
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| T |
19405371 |
aaattttaaccattaaatcaaattaatccaatggttcataaatgtttcataaaaggtgcatgtgagtcct |
19405440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 19424187 - 19424157
Alignment:
| Q |
49 |
aaccattaaatcaaattaatcaaatggttca |
79 |
Q |
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| T |
19424187 |
aaccattaaatcaaattaatcaaatggttca |
19424157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 25758655 - 25758692
Alignment:
| Q |
42 |
aaatcttaaccattaaatcaaattaatcaaatggttca |
79 |
Q |
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| T |
25758655 |
aaatctcaaccattaaatcaaattaatccaatggttca |
25758692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 38163102 - 38163062
Alignment:
| Q |
42 |
aaatcttaaccattaaatcaaattaatcaaatggttcataa |
82 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||| |
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| T |
38163102 |
aaattttaaccattaaatttaattaatcaaatggttcataa |
38163062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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