View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12274_high_8 (Length: 398)
Name: NF12274_high_8
Description: NF12274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12274_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 5413786 - 5414151
Alignment:
| Q |
19 |
acacgtccacaccttatttgaatcacgtatagccttcaacttcttctcgttgttcacagattttaaattgttacgccattgatacaaacnnnnnnntatc |
118 |
Q |
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| T |
5413786 |
acacgtccacaccttatttgaatcacgtatagccttcaacttcttctcgttgttcacacattttaaattgttacgccattgatacaaacaaaaaaatatc |
5413885 |
T |
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| Q |
119 |
ggtttacataaataagtaaaacacaatacaaaaaatataagttgaagaatcttactactccagcaaacatgcacctgggccaccaggattggtattcagc |
218 |
Q |
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| T |
5413886 |
ggtttacataaataagtaaaacacagtacaaaaaatataagttgaagaatcttactactccagcaaacatgcacctgggccaccaggattggtattcagc |
5413985 |
T |
|
| Q |
219 |
ggttgtgactccttctccacatgttgtgggtgctcatcatcgtcattcgcctcttcctctgaattatctgaatcatcatcctcctcctcaacatggtgtt |
318 |
Q |
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| T |
5413986 |
agttgtgactccttctccacatattgtgggtgctcatcatcgtcattcgcctcttcctctgaattatctgaatcatcatcctcctcctcaacatggtgtt |
5414085 |
T |
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| Q |
319 |
gttggggttggagctcagactcgtgcacctgagatggttcagatctatcagtactacggtctctgc |
384 |
Q |
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| T |
5414086 |
gttggggttggagctcatactcgtgcacctgagatggttcagatctatcagtactacggtctctgc |
5414151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 40570215 - 40570143
Alignment:
| Q |
304 |
cctcaacatggtgttgttggggttggagctcagactcgtgcacctgagatggttcagatctatcagtactacg |
376 |
Q |
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| T |
40570215 |
cctcaacacggtgttgttggggctcgggttcagtctcgtgcactagagatggtccagatccatcggtactacg |
40570143 |
T |
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