View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12274_low_1 (Length: 615)
Name: NF12274_low_1
Description: NF12274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12274_low_1 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 17 - 615
Target Start/End: Original strand, 336664 - 337262
Alignment:
| Q |
17 |
aaatttctgtctagtcattcatttgcatctcatgtttttaatggcatttattttttcctttgaatatgttcgttcatttgtagtaaatggtgaatctgat |
116 |
Q |
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| T |
336664 |
aaatttctgtctagtcattcatttgcatctcatgtttttaatggcatttattttttcctttgaatatgttcgttcttttgtagtaaatggtgaatctgat |
336763 |
T |
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| Q |
117 |
catccaagactcgacatccctggtgctgattacaatcaagtcaataacaaggtagatcaattcagtaattgcagactttgtgaattttccttcgaacttt |
216 |
Q |
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| T |
336764 |
catccaagactcgacatccctggtgctgattacaatcaagtcaataacaaggtagatcaattcagtaattgcaggctttgtgaattttcctttgaacttt |
336863 |
T |
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| Q |
217 |
aaggaatatatttttactgataggatgctgatggtaagagttcaacttcaactgtgagcaatgttggaagttccaatagtcatgcatccccaacaagtgc |
316 |
Q |
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| T |
336864 |
aaggaatatatttttactgataggatgctgatggtaagagttcgacttcaactgtgagcaatgctggaagttccaatagtcatgcatctccaacaagtgc |
336963 |
T |
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| Q |
317 |
agcgagcattccacgatctccttcttccaactctaatcaacaacttcttgctcaaaggaaattgtttgcagaatcccaaataggaagatccagttttcag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336964 |
agcgagcattccacgatctccttcttccaactctaatcaacaacttcttgctcaaaggaaattgtttgcagaatcccaaataggaagatccagttttcag |
337063 |
T |
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| Q |
417 |
aagcttttggagccaaaactccctcatcttcctggaattgctccttatagaattgtcctcgggaatgtaaaagataaggtatcccttctgaattctgatc |
516 |
Q |
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| T |
337064 |
aagcttttggagccaaaactccctcatcttcctggaattgctccttatagaattgtccttgggaatgtaaaagataaggtatcccttctgaattctgatc |
337163 |
T |
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| Q |
517 |
tactctaataatatatgttaactggatctgcatgtatggacactagtatttcatttctacatttgcttttgatgtgctgtaatgagtgattcatatcta |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
337164 |
tactctaataatatatgttaactggatctgcatgtatggacactagtatttcatttctacatttgcttttgatgtgctgtagtgagtgattcatatcta |
337262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 405 - 498
Target Start/End: Original strand, 42172507 - 42172600
Alignment:
| Q |
405 |
tccagttttcagaagcttttggagccaaaactccctcatcttcctggaattgctccttatagaattgtcctcgggaatgtaaaagataaggtat |
498 |
Q |
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|||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||| ||||||| || |||||||| |||||||||| |
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| T |
42172507 |
tccagttttcagaaacttttggagccacagctccctcaacttcctggaattgctccttatagagttgtcctgggaaatgtaaaggataaggtat |
42172600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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