View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12274_low_10 (Length: 346)
Name: NF12274_low_10
Description: NF12274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12274_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 9679105 - 9679417
Alignment:
| Q |
16 |
tgtggcgcaactgcaagcattattgaaaacatggtattaccgcctttttgtctcctcccccacctccctcattattttttcttgcacttaaaactttctc |
115 |
Q |
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| T |
9679105 |
tgtggcgcaactgcaagcattattgaaaacatggtagtaccgcctttttgtctcctcccccacctccctcattatcttttcttgcacttaaaactttctc |
9679204 |
T |
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| Q |
116 |
atatttgtatctaacaaaagtttgttgttgatgttgtagtttggtttattggacccaccaaacattttctatcaagtccaagaaaatggaaatagcaatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9679205 |
atatttgtatctaacaaaagtttgttgttgatgttgtagtttggtttattggacccaccaaacattttctatcaagtccaagaaaatggaaatagcaatg |
9679304 |
T |
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| Q |
216 |
ttcatgaaaacctcttctaaacactttcctaaattctatccatcaatctaacaatgcaagatcaattcatcatcctatctttgtttcttgttctttttgg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9679305 |
ttcatgaaaacctcttctaaacactttcctaaattctatccatcaatctaacaatgcaagatcaattcatcatcctatctttgtttcttgttctttttgg |
9679404 |
T |
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| Q |
316 |
tccaatccaagtg |
328 |
Q |
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|||| |||||||| |
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| T |
9679405 |
tccactccaagtg |
9679417 |
T |
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