View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12274_low_12 (Length: 304)

Name: NF12274_low_12
Description: NF12274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12274_low_12
NF12274_low_12
[»] chr7 (7 HSPs)
chr7 (237-295)||(26152098-26152156)
chr7 (238-295)||(12869151-12869208)
chr7 (19-79)||(26151881-26151941)
chr7 (251-290)||(2368634-2368673)
chr7 (20-82)||(12868991-12869053)
chr7 (251-290)||(24503650-24503689)
chr7 (258-290)||(23942870-23942902)
[»] chr3 (6 HSPs)
chr3 (238-295)||(30530973-30531030)
chr3 (251-290)||(20514522-20514561)
chr3 (251-284)||(27933956-27933989)
chr3 (237-290)||(30540620-30540673)
chr3 (258-290)||(30930261-30930293)
chr3 (238-290)||(49436263-49436315)
[»] chr1 (5 HSPs)
chr1 (238-295)||(38810602-38810659)
chr1 (258-290)||(25818302-25818334)
chr1 (251-290)||(30703943-30703983)
chr1 (242-286)||(40091847-40091891)
chr1 (258-290)||(23942810-23942842)
[»] chr8 (7 HSPs)
chr8 (238-290)||(15893332-15893384)
chr8 (237-290)||(27675690-27675743)
chr8 (238-290)||(24619420-24619472)
chr8 (238-290)||(32076075-32076126)
chr8 (238-290)||(29670985-29671039)
chr8 (239-295)||(30944543-30944599)
chr8 (258-290)||(5016325-5016357)
[»] chr5 (6 HSPs)
chr5 (238-295)||(6374477-6374534)
chr5 (252-290)||(26506440-26506478)
chr5 (238-290)||(20159934-20159986)
chr5 (258-290)||(35049665-35049697)
chr5 (251-290)||(17344066-17344105)
chr5 (258-290)||(20883860-20883892)
[»] chr4 (5 HSPs)
chr4 (239-291)||(41784522-41784574)
chr4 (258-290)||(50007183-50007215)
chr4 (258-290)||(50334947-50334979)
chr4 (238-290)||(54254051-54254103)
chr4 (238-288)||(5317867-5317917)
[»] chr6 (3 HSPs)
chr6 (245-288)||(7648407-7648450)
chr6 (238-290)||(2289287-2289339)
chr6 (258-290)||(1030863-1030895)
[»] chr2 (3 HSPs)
chr2 (238-290)||(36342119-36342171)
chr2 (258-290)||(9827561-9827593)
chr2 (258-290)||(35003998-35004030)
[»] scaffold0015 (1 HSPs)
scaffold0015 (251-286)||(32736-32771)


Alignment Details
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 26152098 - 26152156
Alignment:
Q  237 gatacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcacaggttc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26152098 gatacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcataggttc 26152156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 12869151 - 12869208
Alignment:
Q  238 atacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcacaggttc 295  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12869151 atacttgtcattccattatattttgtgaagtgaaacatgtctgaagatgcacatgttc 12869208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 26151881 - 26151941
Alignment:
Q  19 acaccgacatattttttggtggctggttatataacgccaatatctgtggtcaatatgtaac 79  Q
    ||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  26151881 acaccgacatattttttggtggctggttatataacaccgatatttgtggtcaatatgtaac 26151941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 290
Target Start/End: Complemental strand, 2368673 - 2368634
Alignment:
Q  251 cattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2368673 cattatattttgtgaagtgaaacatgtctgaagatgcaca 2368634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 12868991 - 12869053
Alignment:
Q  20 caccgacatattttttggtggctggttatataacgccaatatctgtggtcaatatgtaactaa 82  Q
    |||||||||||||||||||||| |||||| ||||||  |||  ||||| ||||||||||||||    
T  12868991 caccgacatattttttggtggccggttatgtaacgctgatacttgtggccaatatgtaactaa 12869053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 24503650 - 24503689
Alignment:
Q  251 cattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  24503650 cattatattttgtgaagttaaacatgtcttaagatgcaca 24503689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 23942870 - 23942902
Alignment:
Q  258 ttttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||| ||||||||||||||||||||||||||||    
T  23942870 ttttttgaagtgaaacatgtctgaagatgcaca 23942902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 30530973 - 30531030
Alignment:
Q  238 atacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcacaggttc 295  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  30530973 atacttgttattccattatattttgtgaagtgaaacatttttgaagatgcacaagttc 30531030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 290
Target Start/End: Complemental strand, 20514561 - 20514522
Alignment:
Q  251 cattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20514561 cattatattttgtgaagtgaaacatgtctgaagatgcaca 20514522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 27933956 - 27933989
Alignment:
Q  251 cattatattttgtgaagtgaaacatgtctgaaga 284  Q
    ||||||||||||||||||||||||||||||||||    
T  27933956 cattatattttgtgaagtgaaacatgtctgaaga 27933989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 30540673 - 30540620
Alignment:
Q  237 gatacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||| |||| | | ||||||||||||||||||| ||||||||||||    
T  30540673 gatacttgttatcccataaaactttgtgaagtgaaacatgtgtgaagatgcaca 30540620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 30930293 - 30930261
Alignment:
Q  258 ttttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||||||||||||||||||||    
T  30930293 ttttgtgaagtgaaacatgtctgaagatgcaca 30930261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 49436315 - 49436263
Alignment:
Q  238 atacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||  |  |||||||||||||||||||||| ||||||||||    
T  49436315 atacttgttattccaaaaacttttgtgaagtgaaacatgtctaaagatgcaca 49436263  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 38810659 - 38810602
Alignment:
Q  238 atacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcacaggttc 295  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||    
T  38810659 atacttgttatttcattatattgtgtgaagtgaaacatgtctgaagatgcacaagttc 38810602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 25818302 - 25818334
Alignment:
Q  258 ttttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||||||||||||||||||||    
T  25818302 ttttgtgaagtgaaacatgtctgaagatgcaca 25818334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 290
Target Start/End: Complemental strand, 30703983 - 30703943
Alignment:
Q  251 cattatat-tttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  30703983 cattatatctttgtgaagtgaaacatgtctgaagatgcaca 30703943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 40091847 - 40091891
Alignment:
Q  242 ttgttattccattatattttgtgaagtgaaacatgtctgaagatg 286  Q
    |||||||||||| |  |||||||||||||||||||||||||||||    
T  40091847 ttgttattccatcaacttttgtgaagtgaaacatgtctgaagatg 40091891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 23942810 - 23942842
Alignment:
Q  258 ttttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||||||||| ||||||||||    
T  23942810 ttttgtgaagtgaaacatgtctcaagatgcaca 23942842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 15893384 - 15893332
Alignment:
Q  238 atacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  15893384 atacttattattccattaaattttgtgaagtgaaacatgtctgaagatgcaca 15893332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 27675743 - 27675690
Alignment:
Q  237 gatacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||    
T  27675743 gatacttgttattccataaaattttgtgaagtgaaacatgtttgaagatgcaca 27675690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 24619472 - 24619420
Alignment:
Q  238 atacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||| ||||||||||||||||||||||||||| | ||||||||    
T  24619472 atacttgttattccgttatattttgtgaagtgaaacatgtctaacgatgcaca 24619420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 32076075 - 32076126
Alignment:
Q  238 atacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  32076075 atacttgtttttc-attatattttgtgaagtgaaacatgtctgaagatgcaca 32076126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 29670985 - 29671039
Alignment:
Q  238 atacttgttattccattata--ttttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    ||||||| ||||||||||||  |||||||||||||||||||| ||||||||||||    
T  29670985 atacttgctattccattatatattttgtgaagtgaaacatgtttgaagatgcaca 29671039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 30944543 - 30944599
Alignment:
Q  239 tacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcacaggttc 295  Q
    ||||||||||| |||||||| |||  ||||||||||| ||| |||||||||||||||    
T  30944543 tacttgttattacattatatgttgcaaagtgaaacatctcttaagatgcacaggttc 30944599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 5016357 - 5016325
Alignment:
Q  258 ttttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||||||||||| ||||||||    
T  5016357 ttttgtgaagtgaaacatgtctgaggatgcaca 5016325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 6374477 - 6374534
Alignment:
Q  238 atacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcacaggttc 295  Q
    |||||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||    
T  6374477 atacttgttatttcattatattttttgaagtgaaacatgtctcaagatgcacaagttc 6374534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 26506478 - 26506440
Alignment:
Q  252 attatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26506478 attatattttgtgaagtgaaacatgtctgaagatgcaca 26506440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 20159986 - 20159934
Alignment:
Q  238 atacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||| |  ||||||| ||| |||||||||||||||||||||    
T  20159986 atacttgttattccataaacttttgtgtagttaaacatgtctgaagatgcaca 20159934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 35049697 - 35049665
Alignment:
Q  258 ttttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||||||||||||||||||||    
T  35049697 ttttgtgaagtgaaacatgtctgaagatgcaca 35049665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 17344066 - 17344105
Alignment:
Q  251 cattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  17344066 cattatattttgtgaagtgaaacatgtctaaagatacaca 17344105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 20883892 - 20883860
Alignment:
Q  258 ttttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||||||||||||| ||||||    
T  20883892 ttttgtgaagtgaaacatgtctgaagttgcaca 20883860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 41784522 - 41784574
Alignment:
Q  239 tacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcacag 291  Q
    ||||||||||||||||||||||||  ||||||||||| ||| |||||||||||    
T  41784522 tacttgttattccattatattttgcaaagtgaaacatctctcaagatgcacag 41784574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 50007215 - 50007183
Alignment:
Q  258 ttttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||||||||||||||||||||    
T  50007215 ttttgtgaagtgaaacatgtctgaagatgcaca 50007183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 50334979 - 50334947
Alignment:
Q  258 ttttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||||||||||||||||||||    
T  50334979 ttttgtgaagtgaaacatgtctgaagatgcaca 50334947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 54254051 - 54254103
Alignment:
Q  238 atacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||| |  ||||||||||| |||| ||||||||||||||||    
T  54254051 atacttgttattccataaacttttgtgaagtaaaacttgtctgaagatgcaca 54254103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 5317867 - 5317917
Alignment:
Q  238 atacttgttattccattatattttgtgaagtgaaacatgtctgaagatgca 288  Q
    |||||||||||||||| |  ||||||||| |||||||||||| ||||||||    
T  5317867 atacttgttattccataaacttttgtgaaatgaaacatgtctcaagatgca 5317917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 7648450 - 7648407
Alignment:
Q  245 ttattccattatattttgtgaagtgaaacatgtctgaagatgca 288  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  7648450 ttattccattaaattttgtgaagtgaaacatgtttgaagatgca 7648407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 2289339 - 2289287
Alignment:
Q  238 atacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||| | |  |||||||||||||||||| ||||||||||||||    
T  2289339 atacttgttattccttaaacttttgtgaagtgaaacatatctgaagatgcaca 2289287  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 1030863 - 1030895
Alignment:
Q  258 ttttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||||||||||| ||||||||||||    
T  1030863 ttttgtgaagtgaaacatgtgtgaagatgcaca 1030895  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 36342119 - 36342171
Alignment:
Q  238 atacttgttattccattatattttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||||||||||| ||| |  || ||||||||||||||||||||||||||||||    
T  36342119 atacttgttattacataaacttctgtgaagtgaaacatgtctgaagatgcaca 36342171  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 9827593 - 9827561
Alignment:
Q  258 ttttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    |||| ||||||||||||||||||||||||||||    
T  9827593 ttttttgaagtgaaacatgtctgaagatgcaca 9827561  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 35003998 - 35004030
Alignment:
Q  258 ttttgtgaagtgaaacatgtctgaagatgcaca 290  Q
    ||||||||||||| |||||||||||||||||||    
T  35003998 ttttgtgaagtgatacatgtctgaagatgcaca 35004030  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 32736 - 32771
Alignment:
Q  251 cattatattttgtgaagtgaaacatgtctgaagatg 286  Q
    |||||||||||||||||| |||||||||||||||||    
T  32736 cattatattttgtgaagtaaaacatgtctgaagatg 32771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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