View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12274_low_3 (Length: 526)

Name: NF12274_low_3
Description: NF12274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12274_low_3
NF12274_low_3
[»] chr6 (17 HSPs)
chr6 (166-514)||(13123336-13123684)
chr6 (433-509)||(16174707-16174783)
chr6 (429-506)||(10976425-10976502)
chr6 (319-423)||(23846543-23846648)
chr6 (432-489)||(30756322-30756379)
chr6 (433-508)||(32929824-32929901)
chr6 (18-75)||(13115549-13115604)
chr6 (105-149)||(13123295-13123339)
chr6 (351-415)||(22441872-22441936)
chr6 (442-506)||(26499214-26499277)
chr6 (440-506)||(1130262-1130327)
chr6 (440-514)||(9395944-9396019)
chr6 (422-483)||(16440018-16440078)
chr6 (104-160)||(20891677-20891733)
chr6 (367-414)||(30756004-30756051)
chr6 (351-416)||(15483225-15483289)
chr6 (417-482)||(15386569-15386636)
[»] chr4 (19 HSPs)
chr4 (417-506)||(10577124-10577215)
chr4 (303-416)||(24474409-24474523)
chr4 (433-505)||(26160426-26160498)
chr4 (444-504)||(33519725-33519785)
chr4 (433-506)||(39134146-39134220)
chr4 (417-506)||(17332005-17332096)
chr4 (433-508)||(31859251-31859327)
chr4 (417-506)||(34667355-34667450)
chr4 (433-506)||(4733386-4733458)
chr4 (433-508)||(34333096-34333172)
chr4 (351-414)||(20323114-20323177)
chr4 (441-506)||(32022449-32022513)
chr4 (442-506)||(25366911-25366974)
chr4 (433-515)||(7023575-7023658)
chr4 (433-515)||(9288607-9288690)
chr4 (433-478)||(23354231-23354276)
chr4 (433-478)||(18444886-18444931)
chr4 (444-506)||(21047880-21047944)
chr4 (353-397)||(12712460-12712504)
[»] chr3 (7 HSPs)
chr3 (417-507)||(21828558-21828649)
chr3 (433-503)||(23907651-23907720)
chr3 (417-476)||(33578426-33578487)
chr3 (433-506)||(26419433-26419505)
chr3 (432-478)||(31477061-31477107)
chr3 (166-260)||(2278284-2278379)
chr3 (433-476)||(8401795-8401836)
[»] chr8 (15 HSPs)
chr8 (433-505)||(12774223-12774295)
chr8 (295-417)||(15061619-15061742)
chr8 (433-506)||(23876624-23876696)
chr8 (433-508)||(5154455-5154530)
chr8 (434-507)||(6887563-6887635)
chr8 (432-508)||(27084929-27085004)
chr8 (443-506)||(28259901-28259964)
chr8 (433-504)||(28290729-28290800)
chr8 (432-506)||(35134942-35135016)
chr8 (433-506)||(28075174-28075247)
chr8 (358-416)||(21469511-21469569)
chr8 (433-498)||(14184603-14184668)
chr8 (104-157)||(15061947-15062000)
chr8 (360-408)||(24820610-24820658)
chr8 (444-478)||(29292547-29292581)
[»] chr1 (5 HSPs)
chr1 (444-506)||(23421017-23421079)
chr1 (440-506)||(31314235-31314301)
chr1 (433-481)||(34933410-34933458)
chr1 (433-506)||(19257323-19257395)
chr1 (419-482)||(13807202-13807266)
[»] chr5 (6 HSPs)
chr5 (433-506)||(30791294-30791366)
chr5 (319-416)||(26057825-26057923)
chr5 (433-498)||(19763258-19763323)
chr5 (441-509)||(30803273-30803339)
chr5 (459-504)||(7742244-7742289)
chr5 (442-507)||(18178830-18178894)
[»] chr7 (10 HSPs)
chr7 (433-509)||(11467436-11467512)
chr7 (416-478)||(2351658-2351722)
chr7 (433-506)||(5636890-5636965)
chr7 (440-506)||(18467199-18467265)
chr7 (460-505)||(12358236-12358281)
chr7 (422-506)||(19139315-19139401)
chr7 (422-506)||(20738714-20738800)
chr7 (351-417)||(17909822-17909889)
chr7 (432-506)||(23744611-23744684)
chr7 (433-505)||(5312138-5312210)
[»] chr2 (10 HSPs)
chr2 (433-507)||(24048021-24048095)
chr2 (303-379)||(16592595-16592672)
chr2 (443-508)||(17883922-17883985)
chr2 (423-489)||(25397066-25397134)
chr2 (433-505)||(29769788-29769860)
chr2 (416-504)||(15453864-15453953)
chr2 (433-476)||(21842584-21842627)
chr2 (433-476)||(21844213-21844256)
chr2 (433-506)||(21847819-21847895)
chr2 (103-163)||(16592321-16592382)
[»] scaffold0100 (1 HSPs)
scaffold0100 (351-416)||(37751-37815)
[»] scaffold0174 (1 HSPs)
scaffold0174 (364-418)||(23950-24004)
[»] scaffold0338 (2 HSPs)
scaffold0338 (104-157)||(18667-18720)
scaffold0338 (351-406)||(18987-19041)
[»] scaffold1587 (1 HSPs)
scaffold1587 (433-506)||(1248-1320)
[»] scaffold0613 (1 HSPs)
scaffold0613 (367-416)||(3332-3381)
[»] scaffold0035 (1 HSPs)
scaffold0035 (111-163)||(71415-71468)
[»] scaffold0171 (1 HSPs)
scaffold0171 (166-204)||(2732-2770)
[»] scaffold0190 (1 HSPs)
scaffold0190 (443-504)||(11027-11087)
[»] scaffold0113 (1 HSPs)
scaffold0113 (366-410)||(24642-24686)


Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 166 - 514
Target Start/End: Original strand, 13123336 - 13123684
Alignment:
Q  166 gagtctagttaggctctgatttgggagtgtcggaacttttgttttatgtcatttatttgtttatggatttatctgctgagactattattatgtatgtgat 265  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  13123336 gagtctagttaggctctgatatgggagtgtcgggacttttgttttatgtcgtttatttgtttatggatttatctgctgagactattattatgtatgtga- 13123434  T
Q  266 cagacctaattatgtatgatgattattctgctgcaagttttatgaaaaccaacttatgcataatttgagaatatgatgatgagcctctaaattctttcga 365  Q
      |||||||||||||||||||||| ||| ||||||||| | ||||||||||| ||||||||  ||||||||||||||||||||| |||||||||||||||    
T  13123435 --gacctaattatgtatgatgatttttccgctgcaagtataatgaaaaccaatttatgcatgttttgagaatatgatgatgagcatctaaattctttcga 13123532  T
Q  366 ataattgatttatttgaatgatttattgcattcagggtttagggtgttacatccatgatgaacctct--ttatttattggattcaattaataaagttttt 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||   |||||    
T  13123533 ataattgatttatttgaatgatttattgcattcagggtttagggtgttacatccatgatgaacctctagttatttattggattcaattaatagttttttt 13123632  T
Q  464 -tattcagtttatgattcaagtgtctgctttaatttgtatatgtctactctc 514  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13123633 atattcagtttatgattcaagtgtctgctttaatttgtacatgtctactctc 13123684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 433 - 509
Target Start/End: Complemental strand, 16174783 - 16174707
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgtcta 509  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||    
T  16174783 ttatttcttggattcaattaataaagttttttattcagtttatgattcaagtgtcggatttaatttctatatgtcta 16174707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 429 - 506
Target Start/End: Complemental strand, 10976502 - 10976425
Alignment:
Q  429 ctctttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  10976502 ctctctatttgttagattcaattaataaagttttttatccagtttatgattcaagtgtctgatttaatttgtatatgt 10976425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 423
Target Start/End: Original strand, 23846543 - 23846648
Alignment:
Q  319 ttatgcataatttgagaatatgatgatg-agcctctaaattctttcgaataattgatttatttgaatgatttattgcattcagggtttagggtgttacat 417  Q
    ||||||||  |||||||| ||||||||| ||| |||||| ||||||||| ||| |||||||||| | ||||||||||||||||| |||| ||||||||||    
T  23846543 ttatgcatgttttgagaaaatgatgatgtagcatctaaactctttcgaacaatagatttatttgcaagatttattgcattcaggatttaaggtgttacat 23846642  T
Q  418 ccatga 423  Q
     |||||    
T  23846643 tcatga 23846648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 432 - 489
Target Start/End: Original strand, 30756322 - 30756379
Alignment:
Q  432 tttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctg 489  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30756322 tttatttgttgtattcaattaataaagttttttattcagtttatgattcaagtgtctg 30756379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 508
Target Start/End: Complemental strand, 32929901 - 32929824
Alignment:
Q  433 ttatttattggattcaattaataaag--ttttttattcagtttatgattcaagtgtctgctttaatttgtatatgtct 508  Q
    |||||| ||||||| ||||| |||||  ||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  32929901 ttatttcttggatttaattactaaaggtttttttatttagtttatgattcaagtgtctgatttaatttgtatatgtct 32929824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 13115549 - 13115604
Alignment:
Q  18 atttataggcatggaaggatatattgcaaagccacatattctatctcaaatgtggatg 75  Q
    |||||||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  13115549 atttataggcatggaaggatatattgcaaagccacatat--tttctcaaatgtggatg 13115604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 13123295 - 13123339
Alignment:
Q  105 attgatttcttattgcttgtgagggcttgaggattaacttggagt 149  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  13123295 attgatttcttattgcttgtgagtgcttgaggattaacttggagt 13123339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 22441936 - 22441872
Alignment:
Q  351 tctaaattctttcgaataattgatttatttgaatgatttattgcattcagggtttagggtgttac 415  Q
    |||||| ||||| |||||||||||||| ||| ||||||||||| |||||||||||| ||||||||    
T  22441936 tctaaactcttttgaataattgatttaattgcatgatttattgaattcagggtttaaggtgttac 22441872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 26499277 - 26499214
Alignment:
Q  442 ggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    ||||| |||||||||||||||| || || ||||||||||||||||||| ||||||||||||||||    
T  26499277 ggattgaattaataaagttttt-atacaatttatgattcaagtgtctggtttaatttgtatatgt 26499214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 506
Target Start/End: Original strand, 1130262 - 1130327
Alignment:
Q  440 ttggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    ||||||||||| |||||||||||||||||||||||||| || |  ||||| ||||||||||||||||    
T  1130262 ttggattcaatcaataaagttttttattcagtttatga-tctaaagtctgatttaatttgtatatgt 1130327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 9396019 - 9395944
Alignment:
Q  440 ttggattcaattaataaagtttttt-attcagtttatgattcaagtgtctgctttaatttgtatatgtctactctc 514  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||   |||| |||||||||||||| |||| ||||    
T  9396019 ttggattcgattaataaagtttttttattcaatttatgattcaaacatctgatttaatttgtatatttctattctc 9395944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 483
Target Start/End: Original strand, 16440018 - 16440078
Alignment:
Q  422 gatgaacctctt--tatttattggattcaattaataaagttttttattcagtttatgattcaag 483  Q
    ||||||||||||  ||||| |||||||||||||||||||||||   ||||||||||||||||||    
T  16440018 gatgaacctcttcttatttgttggattcaattaataaagtttt---ttcagtttatgattcaag 16440078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 20891733 - 20891677
Alignment:
Q  104 gattgatttcttattgcttgtgagggcttgaggattaacttggagttacctcttatc 160  Q
    ||||||||||||||||||||||||  || ||||| || ||||||| |||||||||||    
T  20891733 gattgatttcttattgcttgtgagtactcgaggactagcttggagctacctcttatc 20891677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 414
Target Start/End: Original strand, 30756004 - 30756051
Alignment:
Q  367 taattgatttatttgaatgatttattgcattcagggtttagggtgtta 414  Q
    ||||||| ||| ||| | ||||||||||||||||||||||||||||||    
T  30756004 taattgaattaattgcaagatttattgcattcagggtttagggtgtta 30756051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 15483225 - 15483289
Alignment:
Q  351 tctaaattctttcgaataattgatttatttgaatgatttattgcattcagggtttagggtgttaca 416  Q
    |||||| ||||||||||| |||| ||| ||| |||||||||||||||| |||| ||| ||||||||    
T  15483225 tctaaactctttcgaata-ttgacttaattgcatgatttattgcattcggggtatagagtgttaca 15483289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 482
Target Start/End: Original strand, 15386569 - 15386636
Alignment:
Q  417 tccatgatgaacctctt--tatttattggattcaattaataaagttttttattcagtttatgattcaa 482  Q
    |||||||| ||||||||  ||||| ||||||| |||||||||||||||  ||| |||||||| |||||    
T  15386569 tccatgattaacctcttcttatttgttggatttaattaataaagttttccatttagtttatgtttcaa 15386636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 417 - 506
Target Start/End: Original strand, 10577124 - 10577215
Alignment:
Q  417 tccatgatgaacctctt--tatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||||||||||||||||  ||||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10577124 tccatgatgaacctcttcttatttgttggattcaatttatgaagttttttattcagtttatgattcaagtgtctgatttaatttgtatatgt 10577215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 303 - 416
Target Start/End: Original strand, 24474409 - 24474523
Alignment:
Q  303 ttttatgaaaaccaacttatgcataatttgagaatatgatgatga-gcctctaaattctttcgaataattgatttatttgaatgatttattgcattcagg 401  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||  || || |||  ||||||||||||||||||||||| ||||||||||||||| | |    
T  24474409 ttttatgaaaaccaatttatgcataatttgagaaaatgaagatgttgcatcaaaaccctttcgaataattgatttatttgtatgatttattgcatttaag 24474508  T
Q  402 gtttagggtgttaca 416  Q
    ||||| |||||||||    
T  24474509 gtttatggtgttaca 24474523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 433 - 505
Target Start/End: Original strand, 26160426 - 26160498
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatg 505  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||    
T  26160426 ttatttgttggattcaattaataaaattttttatttagtttatgattcaagtgtctgatttaatttatatatg 26160498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 444 - 504
Target Start/End: Original strand, 33519725 - 33519785
Alignment:
Q  444 attcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatat 504  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  33519725 attcaattaataaagttttttattcagtttatgattcaagtgtttgatttaatttgtatat 33519785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 506
Target Start/End: Complemental strand, 39134220 - 39134146
Alignment:
Q  433 ttatttattggattcaattaataaagtttttt-attcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||||| | ||||||||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||    
T  39134220 ttatttgtaggattcaattaataaagtttttttattcaatttatgattcaagtgtttgatttaatttgtatatgt 39134146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 506
Target Start/End: Complemental strand, 17332096 - 17332005
Alignment:
Q  417 tccatgatgaacctct--ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    ||||||||||||||||  |||||| |||||||||||| |||||||||| |||| |||||||||||||| || ||  |||||||| |||||||    
T  17332096 tccatgatgaacctctacttatttcttggattcaattcataaagttttgtatttagtttatgattcaattgcctaatttaatttttatatgt 17332005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 433 - 508
Target Start/End: Complemental strand, 31859327 - 31859251
Alignment:
Q  433 ttatttattggattcaattaataaagttttt-tattcagtttatgattcaagtgtctgctttaatttgtatatgtct 508  Q
    |||||| |||||||||| ||||||| ||| | ||||||||||| |||||||||||||| ||||||||||||||||||    
T  31859327 ttattttttggattcaactaataaattttgtatattcagtttacgattcaagtgtctgatttaatttgtatatgtct 31859251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 417 - 506
Target Start/End: Original strand, 34667355 - 34667450
Alignment:
Q  417 tccatgatgaacctct--ttatttattggattcaattaataaag----ttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||| |||||||||||  |||||| ||||||||||||||  |||    ||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  34667355 tccaagatgaacctctccttatttgttggattcaattaaagaagttttttttttattcagtttataattcaagtgtctgatttaatttgtatatgt 34667450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 433 - 506
Target Start/End: Original strand, 4733386 - 4733458
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||||| |||||||||||||||||| | ||||||||| |||||||||||| | |||| ||||||||||||||||    
T  4733386 ttatttgttggattcaattaataaa-tgttttattcaatttatgattcaactatctgatttaatttgtatatgt 4733458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 433 - 508
Target Start/End: Complemental strand, 34333172 - 34333096
Alignment:
Q  433 ttatttattggattcaattaataaag-ttttttattcagtttatgattcaagtgtctgctttaatttgtatatgtct 508  Q
    |||||| ||||||||||||||||||| |||||||||||  |||| ||||||||| | | ||||||||||||||||||    
T  34333172 ttatttgttggattcaattaataaagattttttattcaaattataattcaagtgaccgatttaatttgtatatgtct 34333096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 20323114 - 20323177
Alignment:
Q  351 tctaaattctttcgaataattgatttatttgaatgatttattgcattcagggtttagggtgtta 414  Q
    |||||| |||| | || |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  20323114 tctaaactcttccaaaaaattgaattatttgcatgatttattgcattcagggtttagggtgtta 20323177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 506
Target Start/End: Original strand, 32022449 - 32022513
Alignment:
Q  441 tggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||||||||||||||||||||| |||||||||||| | ||||| ||||  ||||||||||||||||    
T  32022449 tggattcaattaataaagtttt-tattcagtttataaatcaagcgtcttatttaatttgtatatgt 32022513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 506
Target Start/End: Original strand, 25366911 - 25366974
Alignment:
Q  442 ggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    ||||||||| ||||||||||| |||| |||||||||||||| ||| || ||||||||||||||||    
T  25366911 ggattcaat-aataaagttttatatttagtttatgattcaattgtttgatttaatttgtatatgt 25366974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 515
Target Start/End: Complemental strand, 7023658 - 7023575
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaa-tttgtatatgtctactctct 515  Q
    |||||| |||||||||||||||||||||| | |||||||||||  ||||| |||| | ||||| ||| |||||||||| |||||    
T  7023658 ttatttgttggattcaattaataaagtttgtcattcagtttatatttcaattgtcagatttaattttatatatgtctattctct 7023575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 515
Target Start/End: Original strand, 9288607 - 9288690
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaa-tttgtatatgtctactctct 515  Q
    |||||| |||||||||||||||||||||||| ||||||| |||| ||  | |||| | ||||| |||||||||||||| |||||    
T  9288607 ttatttgttggattcaattaataaagtttttcattcagtctatgttttgattgtcagatttaattttgtatatgtctagtctct 9288690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 23354231 - 23354276
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgat 478  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||    
T  23354231 ttatttattgtattcaattaataaggttatttattcagtttatgat 23354276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 18444886 - 18444931
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgat 478  Q
    |||||| |||||||||||||||||| ||| ||||||| ||||||||    
T  18444886 ttattttttggattcaattaataaactttcttattcaatttatgat 18444931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 506
Target Start/End: Original strand, 21047880 - 21047944
Alignment:
Q  444 attcaattaataaagtttt--ttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    ||||||| |||||||||||  ||||||||||| ||||| ||||||||  |||||||| |||||||    
T  21047880 attcaataaataaagttttgtttattcagtttctgattgaagtgtcttatttaatttatatatgt 21047944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 12712504 - 12712460
Alignment:
Q  353 taaattctttcgaataattgatttatttgaatgatttattgcatt 397  Q
    |||| ||||| ||||||||||||||||| ||||||||||| ||||    
T  12712504 taaactcttttgaataattgatttatttaaatgatttattacatt 12712460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 417 - 507
Target Start/End: Complemental strand, 21828649 - 21828558
Alignment:
Q  417 tccatgatgaacctctt--tatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgtc 507  Q
    |||||||||||||||||  ||||| | |||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21828649 tccatgatgaacctcttcttatttttgggattcaattaataat-ttttttattcagtttatgattcaagtgtctgatttaatttgtatatgtc 21828558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 23907720 - 23907651
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtata 503  Q
    |||||| ||||||| |||||||||||||| | ||| | ||||||||||||||||||| |||||||||||||    
T  23907720 ttatttgttggatttaattaataaagtttgt-atttaatttatgattcaagtgtctgatttaatttgtata 23907651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 476
Target Start/End: Original strand, 33578426 - 33578487
Alignment:
Q  417 tccatgatgaacctct--ttatttattggattcaattaataaagttttttattcagtttatg 476  Q
    |||| |||||||||||  ||||| |||||||||||||||||||||||| |||| ||||||||    
T  33578426 tccacgatgaacctctacttattcattggattcaattaataaagttttctatttagtttatg 33578487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 506
Target Start/End: Original strand, 26419433 - 26419505
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||||| |||||||||||||| ||||||||  |||||||||| ||||| | |||| | ||||||||||||||||    
T  26419433 ttatttgttggattcaattaaaaaagttttc-attcagtttacgattcgattgtcagatttaatttgtatatgt 26419505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 478
Target Start/End: Complemental strand, 31477107 - 31477061
Alignment:
Q  432 tttatttattggattcaattaataaagttttttattcagtttatgat 478  Q
    ||||||| ||||||||||||||||||  |||||||| ||||||||||    
T  31477107 tttatttgttggattcaattaataaaagtttttatttagtttatgat 31477061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 2278379 - 2278284
Alignment:
Q  166 gagtctagttaggctctgatttgggagtgtcggaact---tttgttttatgtcatttatttgtttatggatttatctgctgagactattattatgtat 260  Q
    |||||||||||||||||||||| |||||||| | |||   ||| |||| |||| ||||| || | |||||||||  |||||||||||| | |||||||    
T  2278379 gagtctagttaggctctgatttaggagtgtcaggactttgtttcttttgtgtcttttatctgatgatggattta--tgctgagactatgactatgtat 2278284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 476
Target Start/End: Complemental strand, 8401836 - 8401795
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatg 476  Q
    |||||| |||||||||||||||||||  ||||||||||||||||    
T  8401836 ttatttgttggattcaattaataaag--ttttattcagtttatg 8401795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 433 - 505
Target Start/End: Complemental strand, 12774295 - 12774223
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatg 505  Q
    |||||| || |||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  12774295 ttatttgttagattcaattagtaaagttttttattcagtttataattcaagtgtctgatttaatttgtatatg 12774223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 417
Target Start/End: Complemental strand, 15061742 - 15061619
Alignment:
Q  295 gctgcaagttttatgaaaaccaacttatgcataatttgagaatatgatgatg-agcctctaaattctttcgaataattgatttatttgaatgatttattg 393  Q
    ||||| ||||||||||||||| |  |||| ||  |||||||| || |||||| ||| || ||| ||||| |||||||||||||||||  |||||||||||    
T  15061742 gctgcgagttttatgaaaaccgaactatgaatgttttgagaaaataatgatgtagcatccaaactcttttgaataattgatttatttacatgatttattg 15061643  T
Q  394 cattcagggtttagggtgttacat 417  Q
    ||||| ||||||||||||||||||    
T  15061642 cattcggggtttagggtgttacat 15061619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 433 - 506
Target Start/End: Original strand, 23876624 - 23876696
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||    
T  23876624 ttatttgttggattcaattaataaagttttt-attcaatttataattcaagtgtctgatttaatttgtatatgt 23876696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 433 - 508
Target Start/End: Original strand, 5154455 - 5154530
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgtct 508  Q
    |||||| ||||||||||||||||||  |||||||||| |||||||||||||||| || ||||||| ||||||||||    
T  5154455 ttatttgttggattcaattaataaatatttttattcaatttatgattcaagtgtgtgatttaattagtatatgtct 5154530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 434 - 507
Target Start/End: Complemental strand, 6887635 - 6887563
Alignment:
Q  434 tatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgtc 507  Q
    ||||| ||| |||||||||||||| || ||||||||||||||||| |||||||||| |||||||||||||||||    
T  6887635 tatttgttgaattcaattaataaa-ttgtttattcagtttatgatccaagtgtctgatttaatttgtatatgtc 6887563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 432 - 508
Target Start/End: Complemental strand, 27085004 - 27084929
Alignment:
Q  432 tttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgtct 508  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||| || |  ||||| ||||||||||||||||||    
T  27085004 tttatttgttggactcaattaataaagttttttattcagtttatga-tctaaagtctgatttaatttgtatatgtct 27084929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 443 - 506
Target Start/End: Complemental strand, 28259964 - 28259901
Alignment:
Q  443 gattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||   ||||||||||||||||    
T  28259964 gattcaattaataaagttttttattcaatttaagattcaagtgtcaaatttaatttgtatatgt 28259901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 433 - 504
Target Start/End: Complemental strand, 28290800 - 28290729
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatat 504  Q
    |||||| ||||||||||||||||||  |||| ||  ||||| ||||||||||||||| ||||||||||||||    
T  28290800 ttatttgttggattcaattaataaaaattttaatgtagtttttgattcaagtgtctgatttaatttgtatat 28290729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 432 - 506
Target Start/End: Complemental strand, 35135016 - 35134942
Alignment:
Q  432 tttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    ||||||| |||||||||||||||||||||||| || |||||||||||| || | || | ||||| ||||||||||    
T  35135016 tttatttgttggattcaattaataaagtttttcatccagtttatgatttaattttcggatttaaattgtatatgt 35134942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 506
Target Start/End: Original strand, 28075174 - 28075247
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    ||||||||||||||||||||||||||||||| || ||||||| ||||| | |||  | |||||||||| |||||    
T  28075174 ttatttattggattcaattaataaagtttttcatccagtttacgattcgattgttagatttaatttgtttatgt 28075247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 416
Target Start/End: Original strand, 21469511 - 21469569
Alignment:
Q  358 tctttcgaataattgatttatttgaatgatttattgcattcagggtttagggtgttaca 416  Q
    |||||| |||||||||||||||   ||||||||||| |||| |||||||||||||||||    
T  21469511 tctttcaaataattgatttattcacatgatttattgtattcggggtttagggtgttaca 21469569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 498
Target Start/End: Original strand, 14184603 - 14184668
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaattt 498  Q
    |||||| |||||||||||||||||||||||| | | |||||||| ||||| |||| | ||||||||    
T  14184603 ttatttgttggattcaattaataaagtttttcacttagtttatgtttcaattgtcagatttaattt 14184668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 15062000 - 15061947
Alignment:
Q  104 gattgatttcttattgcttgtgagggcttgaggattaacttggagttacctctt 157  Q
    |||||| ||| ||||||||||||| |||||||||||| ||||||| ||||||||    
T  15062000 gattgagttcctattgcttgtgagtgcttgaggattagcttggagctacctctt 15061947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 24820610 - 24820658
Alignment:
Q  360 tttcgaataattgatttatttgaatgatttattgcattcagggtttagg 408  Q
    |||||||||| ||||||||||| |||||||||||||||  |||||||||    
T  24820610 tttcgaataaatgatttatttgcatgatttattgcattttgggtttagg 24820658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 478
Target Start/End: Original strand, 29292547 - 29292581
Alignment:
Q  444 attcaattaataaagttttttattcagtttatgat 478  Q
    |||||||||||||| ||||||||||||||||||||    
T  29292547 attcaattaataaatttttttattcagtttatgat 29292581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 444 - 506
Target Start/End: Complemental strand, 23421079 - 23421017
Alignment:
Q  444 attcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||    
T  23421079 attcaattaataaagttttttattcagtttatgattcaagtgtcagatttgatttgtatatgt 23421017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 506
Target Start/End: Original strand, 31314235 - 31314301
Alignment:
Q  440 ttggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||||||||||||||||||||||||||||| | ||||||| ||||||||| ||||||||||||||||    
T  31314235 ttggattcaattaataaagttttttattcaatgtatgatttaagtgtctgatttaatttgtatatgt 31314301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 433 - 481
Target Start/End: Complemental strand, 34933458 - 34933410
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattca 481  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  34933458 ttatttgttggattcaattaattaagttttttattcagtttatgattca 34933410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 506
Target Start/End: Complemental strand, 19257395 - 19257323
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||| ||  ||||| ||||| ||||||||||    
T  19257395 ttatttgttggattcaattaataaatatttttattcagtttatgatttaa-agtctgatttaacttgtatatgt 19257323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 482
Target Start/End: Complemental strand, 13807266 - 13807202
Alignment:
Q  419 catgatgaacctct--ttatttattggattcaattaataaagttttttattcagtttatgattcaa 482  Q
    |||||||||||| |  |||||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  13807266 catgatgaacctgtacttatttattggattcaattaataaag-tttctatttagtttatgattcaa 13807202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 433 - 506
Target Start/End: Original strand, 30791294 - 30791366
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||    
T  30791294 ttattttttggattcaattaataaagtttt-tattcagtttatgatttaagtgtttgatttaatttgtatatgt 30791366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 416
Target Start/End: Complemental strand, 26057923 - 26057825
Alignment:
Q  319 ttatgcataatttgagaatatgatgatg-agcctctaaattctttcgaataattgatttatttgaatgatttattgcattcagggtttagggtgttaca 416  Q
    ||||||||| |||||||| || |||| | ||| |||||| ||||| |||| ||||| ||||| | |||||||||| |||||||||||||||||||||||    
T  26057923 ttatgcatattttgagaaaattatgacgtagcatctaaactcttttgaatgattgacttattggcatgatttattacattcagggtttagggtgttaca 26057825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 433 - 498
Target Start/End: Complemental strand, 19763323 - 19763258
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaattt 498  Q
    |||||| |||||||||||||||||| | ||||||| ||| ||||||||||||||||| ||||||||    
T  19763323 ttatttgttggattcaattaataaattattttatttagtgtatgattcaagtgtctgatttaattt 19763258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 509
Target Start/End: Original strand, 30803273 - 30803339
Alignment:
Q  441 tggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgtcta 509  Q
    ||||||||||||||| | ||||||||||| |||||||||||||| |||  |||||||||||||||||||    
T  30803273 tggattcaattaataca-ttttttattcaatttatgattcaagtatct-atttaatttgtatatgtcta 30803339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 7742289 - 7742244
Alignment:
Q  459 ttttttattcagtttatgattcaagtgtctgctttaatttgtatat 504  Q
    |||||||||||||||||||||| | |||||| ||||||||||||||    
T  7742289 ttttttattcagtttatgattcgaatgtctgatttaatttgtatat 7742244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 507
Target Start/End: Original strand, 18178830 - 18178894
Alignment:
Q  442 ggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgtc 507  Q
    ||||| ||||||||||||||| ||||||||||| ||||  | ||| || |||||||||||||||||    
T  18178830 ggattaaattaataaagtttt-tattcagtttaagatttgattgtttgatttaatttgtatatgtc 18178894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 433 - 509
Target Start/End: Complemental strand, 11467512 - 11467436
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgtcta 509  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||||||||||||    |||||||||||||||||||    
T  11467512 ttatttgttggattcaattaatcaagttttttattcagcttatgattcaagtgttatatttaatttgtatatgtcta 11467436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 478
Target Start/End: Original strand, 2351658 - 2351722
Alignment:
Q  416 atccatgatgaacctct--ttatttattggattcaattaataaagttttttattcagtttatgat 478  Q
    |||||||||||||||||  || ||| |||||||||||||||||| || |||||||||||||||||    
T  2351658 atccatgatgaacctctatttctttgttggattcaattaataaaattatttattcagtttatgat 2351722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 506
Target Start/End: Original strand, 5636890 - 5636965
Alignment:
Q  433 ttatttattggattcaattaataaagtttt--ttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||||| |||||||  ||| ||||||||||  ||||||||||||||||||||||||| | |||||||| |||||||    
T  5636890 ttatttgttggatttgattgataaagttttttttattcagtttatgattcaagtgtcagatttaatttatatatgt 5636965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 506
Target Start/End: Original strand, 18467199 - 18467265
Alignment:
Q  440 ttggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    ||||||||||||||||||    || |||||||||||||||||||||||   ||||||||||||||||    
T  18467199 ttggattcaattaataaaaaacttcattcagtttatgattcaagtgtcaaatttaatttgtatatgt 18467265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 12358281 - 12358236
Alignment:
Q  460 tttttattcagtttatgattcaagtgtctgctttaatttgtatatg 505  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||||    
T  12358281 tttttattcaatttatgattcaagtgtctgatttaatttgcatatg 12358236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 506
Target Start/End: Complemental strand, 19139401 - 19139315
Alignment:
Q  422 gatgaacctct--ttatttattggattcaattaataaagttttttattcagtttatgattca-agtgtctgctttaatttgtatatgt 506  Q
    |||||||||||  ||||||  |||||||||||||||||| ||| |||  ||||||||||||| | |||||| ||||||||||||||||    
T  19139401 gatgaacctctacttatttcatggattcaattaataaag-tttctatatagtttatgattcacattgtctgatttaatttgtatatgt 19139315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 506
Target Start/End: Complemental strand, 20738800 - 20738714
Alignment:
Q  422 gatgaacctct--ttatttattggattcaattaataaagttttttattcagtttatgattca-agtgtctgctttaatttgtatatgt 506  Q
    |||||||||||  ||||||  |||||||||||||||||| ||| |||  ||||||||||||| | |||||| ||||||||||||||||    
T  20738800 gatgaacctctacttatttcatggattcaattaataaag-tttctatatagtttatgattcacattgtctgatttaatttgtatatgt 20738714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 417
Target Start/End: Complemental strand, 17909889 - 17909822
Alignment:
Q  351 tctaaattctttcgaataattgatttatttgaatgatttattgcatt-cagggtttagggtgttacat 417  Q
    |||||| ||||| |||||||||  ||||||| |||||||||||| ||  |||||||||||||||||||    
T  17909889 tctaaactcttttgaataattgtattatttgcatgatttattgcgttaaagggtttagggtgttacat 17909822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 506
Target Start/End: Original strand, 23744611 - 23744684
Alignment:
Q  432 tttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    ||||||| ||||||||||||||||||| ||| || | ||||||| |||||| ||  || ||||||||||||||||    
T  23744611 tttatttgttggattcaattaataaag-tttctacttagtttataattcaattgcttgatttaatttgtatatgt 23744684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 505
Target Start/End: Complemental strand, 5312210 - 5312138
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatg 505  Q
    |||||| |||||||||||| ||||| ||||| ||| |||||||| ||| | |||  | |||||||||||||||    
T  5312210 ttatttgttggattcaattgataaattttttcatttagtttatgtttcgattgttagatttaatttgtatatg 5312138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 433 - 507
Target Start/End: Original strand, 24048021 - 24048095
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgtc 507  Q
    |||||| ||||||||||| |||||  ||||| ||| |||||||||||||||||| || |||||||||||||||||    
T  24048021 ttatttgttggattcaatcaataatttttttaatttagtttatgattcaagtgtttgatttaatttgtatatgtc 24048095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 379
Target Start/End: Original strand, 16592595 - 16592672
Alignment:
Q  303 ttttatgaaaaccaacttatgcataatttgagaatatgatgatg-agcctctaaattctttcgaataattgatttatt 379  Q
    |||||||||||  || ||||||||  |||||||| ||||||||| ||| |||||| ||||||||||||||||||||||    
T  16592595 ttttatgaaaataaagttatgcatgttttgagaaaatgatgatgtagcatctaaactctttcgaataattgatttatt 16592672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 508
Target Start/End: Complemental strand, 17883985 - 17883922
Alignment:
Q  443 gattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgtct 508  Q
    ||||||| ||||||||| ||||  ||||||||||| |||||||| || ||||||||||||||||||    
T  17883985 gattcaactaataaagtgtttt--tcagtttatgaatcaagtgtttgatttaatttgtatatgtct 17883922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 423 - 489
Target Start/End: Original strand, 25397066 - 25397134
Alignment:
Q  423 atgaacctctt--tatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctg 489  Q
    |||||||||||  ||||| ||| ||||||||||||||||| |||  |||||||||||||||| ||||||    
T  25397066 atgaacctcttcttatttgttgtattcaattaataaagttgtttgatcagtttatgattcaaatgtctg 25397134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 505
Target Start/End: Original strand, 29769788 - 29769860
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatg 505  Q
    |||||| ||||||| |||||||||| |||| ||| ||||||||||||| | || | | |||||||||||||||    
T  29769788 ttatttgttggatttaattaataaaattttctatccagtttatgattctattgcccgatttaatttgtatatg 29769860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 504
Target Start/End: Complemental strand, 15453953 - 15453864
Alignment:
Q  416 atccatgatgaacctct--ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatat 504  Q
    ||||| |||||||||||  ||||||  ||||||||| ||||||||||||| ||| | |||||||||||| ||||| | | |||||||||||    
T  15453953 atccacgatgaacctctatttatttgatggattcaactaataaagttttt-attgaatttatgattcaattgtcttcatcaatttgtatat 15453864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 476
Target Start/End: Complemental strand, 21842627 - 21842584
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatg 476  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||    
T  21842627 ttatttgttggattcaattaataaagtttttcattcagtctatg 21842584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 476
Target Start/End: Complemental strand, 21844256 - 21844213
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatg 476  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||    
T  21844256 ttatttgttggattcaattaataaagtttttcattcagtctatg 21844213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 506
Target Start/End: Complemental strand, 21847895 - 21847819
Alignment:
Q  433 ttatttattggattcaattaataaagtttttt---attcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||||| |||| || |||||||||||||||||   |||||| |||||||| ||| ||| | ||||||||||||||||    
T  21847895 ttattttttgggtttaattaataaagtttttttttattcaggttatgatttaagcgtcggatttaatttgtatatgt 21847819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 16592321 - 16592382
Alignment:
Q  103 ggattgatttcttattgcttgtgagggcttgaggattaacttggagttacct-cttatcttt 163  Q
    ||||||| ||||||||||| ||||| |||||||| |||| |||||| ||||| |||||||||    
T  16592321 ggattgagttcttattgctagtgagtgcttgagggttaatttggagctacctccttatcttt 16592382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 37815 - 37751
Alignment:
Q  351 tctaaattctttcgaataattgatttatttgaatgatttattgcattcagggtttagggtgttaca 416  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||    
T  37815 tctaaatccttt-gaataattgatttatttgcatgatttattgcattcggggtttagagtgttaca 37751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 24004 - 23950
Alignment:
Q  364 gaataattgatttatttgaatgatttattgcattcagggtttagggtgttacatc 418  Q
    |||||||||||||||||| |||||||||||||||| | |||||| ||||||||||    
T  24004 gaataattgatttatttgcatgatttattgcattcggagtttagtgtgttacatc 23950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 18667 - 18720
Alignment:
Q  104 gattgatttcttattgcttgtgagggcttgaggattaacttggagttacctctt 157  Q
    |||||| |||||||| |||||||| |||||||||||| ||||||||||||||||    
T  18667 gattgagttcttatttcttgtgagtgcttgaggattagcttggagttacctctt 18720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 18987 - 19041
Alignment:
Q  351 tctaaattctttcgaataattgatttatttgaatgatttattgcattcagggttta 406  Q
    |||||| |||||||||||||||||||||||| || |||||||| ||| ||||||||    
T  18987 tctaaactctttcgaataattgatttatttgcat-atttattgtattaagggttta 19041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1587 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1587
Description:

Target: scaffold1587; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 506
Target Start/End: Complemental strand, 1320 - 1248
Alignment:
Q  433 ttatttattggattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatatgt 506  Q
    |||||| || ||||||||||||||  |||||||||||  ||||||||||| |||||  ||||||||||||||||    
T  1320 ttatttgttagattcaattaataat-ttttttattcatattatgattcaaatgtcttatttaatttgtatatgt 1248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 3332 - 3381
Alignment:
Q  367 taattgatttatttgaatgatttattgcattcagggtttagggtgttaca 416  Q
    ||||||| ||||||| ||||||||| ||||| ||||||||||||||||||    
T  3332 taattgaattatttgcatgatttatcgcattaagggtttagggtgttaca 3381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 71415 - 71468
Alignment:
Q  111 ttcttattgcttgtgagggcttgaggattaacttggagttacct-cttatcttt 163  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||    
T  71415 ttcttattgcttgtgagtgcttgaggattagcttggagctacctccttatcttt 71468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 2770 - 2732
Alignment:
Q  166 gagtctagttaggctctgatttgggagtgtcggaacttt 204  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  2770 gagtctagttaggctctgatttaggagtgtcgggacttt 2732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 504
Target Start/End: Complemental strand, 11087 - 11027
Alignment:
Q  443 gattcaattaataaagttttttattcagtttatgattcaagtgtctgctttaatttgtatat 504  Q
    |||| ||||||| |||||||| |||||||||||||||| |  ||||| ||||||||||||||    
T  11087 gatttaattaatcaagttttt-attcagtttatgattctatagtctgatttaatttgtatat 11027  T

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Target: scaffold0113 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 24642 - 24686
Alignment:
Q  366 ataattgatttatttgaatgatttattgcattcagggtttagggt 410  Q
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T  24642 ataattgacttatttgcatgatttattgcattcagaggttagggt 24686  T

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