View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12274_low_4 (Length: 507)
Name: NF12274_low_4
Description: NF12274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12274_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 489
Target Start/End: Complemental strand, 27524784 - 27524302
Alignment:
| Q |
9 |
gaagcagagacacaaaccaaccaaatatgcaagagggtcaccaaaaccaccaccatctcaccaacattttttctccccattttgtactccctttagcaac |
108 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27524784 |
gaagcagtgacacaaaccaaccaaatatgcaagagggtcaccaaaaccaccaccatctcaccaacattttttctccccattttgtactccctttagcaac |
27524685 |
T |
|
| Q |
109 |
caaccactacacttaacttcagttgcagtgagagtaaaagaaagggtcccgtatctttttataaccnnnnnnncacacataaaatgttcctcctttgtcc |
208 |
Q |
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| T |
27524684 |
caaccactacacttaacttcagttgcagtgagagtgaaagaaagggtcccgtatctttttataaccaaaaaaacacacataaaatgttcctcctttgtcc |
27524585 |
T |
|
| Q |
209 |
aaagtcagtgtttttaaatgtgctacgtgtttgactggcaagtcaatgtctgaatattgattgattgatagacttataactggttttttgacaattaagt |
308 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27524584 |
aaagtcagtgtttttaaatgtgctacatgtttgactggcaagtcaatgtctgaatattgattgattgatagacttataactggttttttgacaattaagt |
27524485 |
T |
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| Q |
309 |
tgcatgagaaaatccaactacaattcaaatgattgacattttat---ttttgttaactcttctactcgagagttttagtaacttgaagttcggtcatgag |
405 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
27524484 |
tgcatgagaaaatccaactacaattcaaatga-tgacattttatttattatgttaacccttctactcgagagttttaagaacttgaagttcggtcacgag |
27524386 |
T |
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| Q |
406 |
gcaagtcaatgttaggaaagtatgtnnnnnnnnnttatagttgaattagtggatatgaaattaatgtgaaataatagcatacat |
489 |
Q |
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| T |
27524385 |
gcaagtcaatgttaggaaagtacgtaaaaaaaaattatagtcaaattagtggatatgaaactaatgtgaaataatagaatacat |
27524302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 27530373 - 27530313
Alignment:
| Q |
8 |
agaagcagagacacaaaccaaccaaatatgcaagagggtcaccaaaaccaccaccatctca |
68 |
Q |
| |
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|||||||| |||||||||||| |||| |||||| |||||||||||||| |||||||||||| |
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| T |
27530373 |
agaagcagtgacacaaaccaaacaaacatgcaaaagggtcaccaaaactaccaccatctca |
27530313 |
T |
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