View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12274_low_5 (Length: 424)
Name: NF12274_low_5
Description: NF12274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12274_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 5351835 - 5352243
Alignment:
| Q |
1 |
tcacactaccatctccgccaaattggtgttttcattgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaattta |
100 |
Q |
| |
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|||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5351835 |
tcacactatcatctccgacaaattggagttttcatcgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaattta |
5351934 |
T |
|
| Q |
101 |
acggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5351935 |
acggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattg |
5352034 |
T |
|
| Q |
201 |
aaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaataaaacgtatttgttctttatttacatttagaattttatttgcattgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
5352035 |
aaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaaaaaaatgta-ttgttctttatttgcatttagaattttatttgcattgt |
5352133 |
T |
|
| Q |
301 |
tgccttgtcctgtgttttatttgcaatgttatgttgaagtttgttaaaattccatgtattattatgaaataatagtcttgtcacattattcattctggta |
400 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5352134 |
tgccttgtcctgtgtttgatttacaatgttatgttgaagtttgttaaaattccatgtattattatgaaataatagtcttgtcacattattcattctggta |
5352233 |
T |
|
| Q |
401 |
ttacacaggt |
410 |
Q |
| |
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||||| |||| |
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| T |
5352234 |
ttacataggt |
5352243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 5344817 - 5345024
Alignment:
| Q |
1 |
tcacactaccatctccgccaaattggtgttttcattgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaattta |
100 |
Q |
| |
|
||||| || |||||||| ||||| || |||||| |||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||| |
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| T |
5344817 |
tcacaatatcatctccgacaaatcggagttttccttgatcttcatttcataaataaacccgaatttttcttaaatgcttttcagcctccagcaaaattta |
5344916 |
T |
|
| Q |
101 |
acggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattg |
200 |
Q |
| |
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| T |
5344917 |
atagtgatggtgatttgattgatgaagatgctaagaataggttgttggcaattctgttgtccttgaaggcatttactctgcaacttcaaggcaaaaattg |
5345016 |
T |
|
| Q |
201 |
aaacaact |
208 |
Q |
| |
|
|||||||| |
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|
| T |
5345017 |
aaacaact |
5345024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 5325267 - 5325075
Alignment:
| Q |
10 |
catctccgccaaattggtgttttcattgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaatttaacggtgatg |
109 |
Q |
| |
|
|||||||||||||| || |||||| ||||| ||||||||||||||||||| ||||| | | || | | ||| ||| ||||| |||| ||||| ||||| |
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|
| T |
5325267 |
catctccgccaaatcggggttttccttgatattcatttcatcaataaacctgagttctacctagatgtatttaagcatccagataaatgtaacgatgatg |
5325168 |
T |
|
| Q |
110 |
gcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaa |
202 |
Q |
| |
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| || ||| ||||| |||| |||||||| ||| || |||| || |||||||||||| |||||||||| |||||||||||| |||||||| |
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|
| T |
5325167 |
gtgacttggttgatgaagagatcaagaatagattgaagaaagttattgtgtccttgaaggaatttacccttaaacttcaaggcagaaattgaa |
5325075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 5338287 - 5338089
Alignment:
| Q |
10 |
catctccgccaaattggtgttttcattgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaatttaacggtgatg |
109 |
Q |
| |
|
|||||||||||||| || |||||| ||||| ||||||||||||||||||| ||||| || | | ||| ||| ||||| |||||| ||| ||||| |
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| T |
5338287 |
catctccgccaaatcggggttttccttgatattcatttcatcaataaacctgagttccatctagatgtatttaagcatccagataaatttgacgatgatg |
5338188 |
T |
|
| Q |
110 |
gcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaaacaact |
208 |
Q |
| |
|
| || ||| ||||| |||| |||||||| || ||| ||||||| ||||||| |||| |||||||||||| |||||||| ||| ||||||||||| |
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|
| T |
5338187 |
gtgacttggttgatgaagagatcaagaatagattcaaggaagttcttgtgtccttaaaggaatttacccttcagcttcaaggttaaatttgaaacaact |
5338089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 5345382 - 5345433
Alignment:
| Q |
337 |
aagtttgttaaaattccatgtattattatgaaataatagtcttgtcacattattc |
391 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |
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|
| T |
5345382 |
aagtttgttaaaattccatgca--att-tgaaataatagtcttgtcacattattc |
5345433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 14535479 - 14535283
Alignment:
| Q |
1 |
tcacactaccatctccgccaaattggtgttttcattgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaattta |
100 |
Q |
| |
|
|||||||| ||||| |||||| |||| ||| || ||||||||||||||||||||||| ||||| || ||| || ||| |||| || ||||| || | |
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| T |
14535479 |
tcacactatcatctacgccaagttggaatttatatcgatcttcatttcatcaataaacctgagttctttataagagcatttgagccacctgcaaagttca |
14535380 |
T |
|
| Q |
101 |
acggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaa |
197 |
Q |
| |
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| ||||||||||||||||||| |||| || |||||||| ||| | ||||||||| || ||| |||||||||| || |||||||||||||| |
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| T |
14535379 |
atactgatggcgatttgattgatgaagaggctaagaataagttgaaacaagttcttttatctttgcaggcatttactctaaggcttcaaggcaaaaa |
14535283 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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