View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12274_low_6 (Length: 422)
Name: NF12274_low_6
Description: NF12274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12274_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 36757614 - 36758002
Alignment:
| Q |
19 |
tatacaccatggaggattgttgtctgggtatatatttaacaaatcaaaacaaagcaaatagaattccacactaaatggaactcatcccatcacttgccct |
118 |
Q |
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| T |
36757614 |
tatacaccatggaggattgttgtctgggtatatatttaacaaatcaaaacaaagcaaatagaattccacactaaatggaactcatcccattacttaccct |
36757713 |
T |
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| Q |
119 |
atattttctttctcgtaactcttaattctcaaaccacccatgatttaatgtgatcaaacttaattatcattgcctaaaacttaagtcattagaagtaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36757714 |
atattttctttctcgtaactcttaattctcaaaccacccatgatttaatgtgatcaaacttaattatcattgcctaaaacttaagtcattagaagtaatt |
36757813 |
T |
|
| Q |
219 |
ctcactcttattttcaccttaaaacttaagtcattagatataaaaatcattttacttatgtttctcaacattcaattttctatttaatgtagactcgtac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36757814 |
ctcactcttattttcaccttaaaacttaagtcattagatataaaaatcattttacttatgtttctcaacattcaattttctatttaatgtagactcgtac |
36757913 |
T |
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| Q |
319 |
tcatgtttcacatacacatctgcttctcaagtgtgagtgcactcattcatttggggttgctctccctcaagtagaaatttttcattcac |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36757914 |
tcatgtttcacatacacatctgcttctcaagtgtgagtgcactcattcatttggggttgctctccctcaagtagaaatttttctttcac |
36758002 |
T |
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