View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12274_low_9 (Length: 347)
Name: NF12274_low_9
Description: NF12274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12274_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 23471130 - 23471468
Alignment:
| Q |
12 |
acctgtgtagtactagcacttcagattgaatgtgtgtcgtccaacaccagcactttcaattacatattttcacttttattttctcaaattatcactggtg |
111 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||| |
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| T |
23471130 |
acctatgtggtactagcacttcagattgaatgtgtgtcgtccaacaccagcactttcaattacatattttcatttttattttctcaaattattaccggtg |
23471229 |
T |
|
| Q |
112 |
tctatgtgttagtgttgtg------------------tcagtgcttcgtagcacaaaacaaggaaaatatgttatcatattgaagaatataaatctaact |
193 |
Q |
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| T |
23471230 |
tatatgtgttaatgttgtgtccggtgtcccttatgtgtcagtgcttcgtagcacaaaacaaggaaaatatgttatcatattgaagaatataaatctaact |
23471329 |
T |
|
| Q |
194 |
atacaacagaaacactaacaagttatgtgcaatatggatcaccaagatttgtcatgcttgatctgtctgttttctctttcagcattattttgacttttca |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23471330 |
atacaacagaaacactaacaagttatgtgcaatatggatcaccaagatttgtcatgcttgatctgtctgttttctctttcagcattattttgacttttca |
23471429 |
T |
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| Q |
294 |
gcattattgatctatagaccaacttgacatgtattttgt |
332 |
Q |
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| T |
23471430 |
gcattattgatctatagaccaacttgacatgtattttgt |
23471468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 24 - 332
Target Start/End: Original strand, 23435656 - 23435982
Alignment:
| Q |
24 |
ctagcacttcagattgaatgtgtgtcgtccaacaccagcactttcaattacatattttcacttttattttctcaaattatcactggtgtctatgtgttag |
123 |
Q |
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| T |
23435656 |
ctagcacttcagattgaacgtgtgtcgtccaacaccagcactttcaattacatattttcatttttattttctcaaattattaccggtgtatatgtgttaa |
23435755 |
T |
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| Q |
124 |
tgttgtg------------------tcagtgcttcgtagcacaaaacaaggaaaatatgttatcatattgaagaatataaatctaactatacaacagaaa |
205 |
Q |
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| T |
23435756 |
tgttgtgtccggtgtcccttatgtgtcagtgcttcgtagcacaaaacaaggaaaatatgttatcatattgaagaatataaatctaactatacaacagaaa |
23435855 |
T |
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| Q |
206 |
cactaacaagttatgtgcaatatggatcaccaagatttgtcatgcttgatctgtctgttttctctttcagcattattttgacttttcagcattattgatc |
305 |
Q |
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| T |
23435856 |
cactaacaagttatgtgcaatatggatcaccaagatttgtcatgcttgatatgtctgttttctctttcagcattattttgacttttcagcattattgatc |
23435955 |
T |
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| Q |
306 |
tatagaccaacttgacatgtattttgt |
332 |
Q |
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| T |
23435956 |
tatagaccaacttgacatgtattttgt |
23435982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 43843637 - 43843684
Alignment:
| Q |
81 |
tcacttttattttctcaaattatcactggtgtctatgtgttagtgttg |
128 |
Q |
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| T |
43843637 |
tcacttttattttctcaaattattattggtgtctacgtgttagtgttg |
43843684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 7367577 - 7367535
Alignment:
| Q |
89 |
attttctcaaattatcactggtgtctatgtgttagtgttgtgt |
131 |
Q |
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| T |
7367577 |
attttctcaaattattattggtgtctatgtgttagtgtcgtgt |
7367535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 13338682 - 13338727
Alignment:
| Q |
89 |
attttctcaaattatcactggtgtctatgtgttagtgttgtgtcag |
134 |
Q |
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| T |
13338682 |
attttcttaaattattactggtgtcgacgtgttagtgttgtgtcag |
13338727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 35335633 - 35335588
Alignment:
| Q |
81 |
tcacttttattttctcaaattatcactggtgtctatgtgttagtgt |
126 |
Q |
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| T |
35335633 |
tcactttcattttctcaaattattactagtgtctatgtgtcagtgt |
35335588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 4493783 - 4493824
Alignment:
| Q |
91 |
tttctcaaattatcactggtgtctatgtgttagtgttgtgtc |
132 |
Q |
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| T |
4493783 |
tttctcaaatgattactggtgtgtatgtgttagtgttgtgtc |
4493824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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