View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12275_low_12 (Length: 224)

Name: NF12275_low_12
Description: NF12275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12275_low_12
NF12275_low_12
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-216)||(391554-391770)
scaffold0002 (1-213)||(380856-381068)
[»] chr4 (25 HSPs)
chr4 (1-208)||(12885375-12885581)
chr4 (1-216)||(10985604-10985818)
chr4 (1-211)||(16396161-16396371)
chr4 (4-216)||(3268432-3268644)
chr4 (7-216)||(12217656-12217864)
chr4 (1-211)||(21332439-21332649)
chr4 (1-211)||(25239789-25239999)
chr4 (1-208)||(45313241-45313447)
chr4 (1-209)||(9901599-9901806)
chr4 (1-125)||(3270641-3270765)
chr4 (4-211)||(26780710-26780917)
chr4 (21-206)||(13861428-13861613)
chr4 (21-210)||(8082159-8082348)
chr4 (1-196)||(17282400-17282595)
chr4 (16-207)||(28892022-28892213)
chr4 (16-208)||(15427790-15427979)
chr4 (16-208)||(15434408-15434597)
chr4 (76-211)||(26778759-26778894)
chr4 (1-80)||(49402787-49402866)
chr4 (116-211)||(18284510-18284605)
chr4 (181-211)||(3270771-3270801)
chr4 (158-208)||(8168007-8168057)
chr4 (17-51)||(13033639-13033673)
chr4 (1-47)||(34845516-34845562)
chr4 (2-95)||(15455536-15455629)
[»] chr7 (16 HSPs)
chr7 (1-208)||(22705694-22705900)
chr7 (1-211)||(21802545-21802755)
chr7 (3-211)||(7595446-7595658)
chr7 (4-208)||(29164947-29165150)
chr7 (1-205)||(2249892-2250096)
chr7 (1-208)||(20093631-20093837)
chr7 (1-207)||(30770087-30770291)
chr7 (2-211)||(9548854-9549072)
chr7 (40-211)||(21801740-21801911)
chr7 (13-211)||(18153235-18153433)
chr7 (5-208)||(38612656-38612859)
chr7 (1-207)||(30764879-30765085)
chr7 (1-208)||(47295580-47295786)
chr7 (1-211)||(21592770-21592982)
chr7 (2-95)||(18185720-18185813)
chr7 (1-54)||(28794079-28794132)
[»] chr2 (14 HSPs)
chr2 (1-216)||(23755708-23755923)
chr2 (1-216)||(3770355-3770570)
chr2 (1-196)||(42534032-42534227)
chr2 (1-208)||(25133822-25134038)
chr2 (1-208)||(26154880-26155087)
chr2 (1-208)||(41266094-41266300)
chr2 (20-207)||(3105318-3105505)
chr2 (4-207)||(19092819-19093021)
chr2 (1-123)||(23929892-23930014)
chr2 (5-95)||(29568414-29568503)
chr2 (96-203)||(29569029-29569136)
chr2 (1-211)||(27347264-27347473)
chr2 (129-211)||(23932902-23932984)
chr2 (76-210)||(22452716-22452848)
[»] chr6 (27 HSPs)
chr6 (1-211)||(18736095-18736305)
chr6 (5-211)||(18729020-18729226)
chr6 (28-216)||(21508528-21508716)
chr6 (1-216)||(23574489-23574703)
chr6 (1-211)||(15119615-15119825)
chr6 (1-211)||(4409291-4409502)
chr6 (1-171)||(12738590-12738760)
chr6 (1-211)||(29094911-29095122)
chr6 (1-211)||(29482686-29482896)
chr6 (1-209)||(14910701-14910908)
chr6 (4-201)||(24438465-24438663)
chr6 (1-208)||(18258492-18258699)
chr6 (1-206)||(17756917-17757122)
chr6 (1-211)||(8306155-8306364)
chr6 (1-211)||(18014352-18014562)
chr6 (3-210)||(15349523-15349731)
chr6 (5-206)||(15369523-15369725)
chr6 (1-130)||(7968470-7968599)
chr6 (1-88)||(23524159-23524246)
chr6 (14-207)||(3876426-3876619)
chr6 (5-95)||(19860062-19860152)
chr6 (5-96)||(15318988-15319079)
chr6 (121-216)||(18043493-18043588)
chr6 (134-216)||(23524248-23524330)
chr6 (147-216)||(19857724-19857793)
chr6 (150-211)||(27964968-27965029)
chr6 (138-210)||(15318874-15318945)
[»] chr5 (19 HSPs)
chr5 (1-208)||(41037543-41037750)
chr5 (4-216)||(5931288-5931500)
chr5 (1-208)||(28067922-28068128)
chr5 (1-211)||(19329819-19330029)
chr5 (1-211)||(15620087-15620296)
chr5 (1-211)||(20899491-20899701)
chr5 (10-209)||(8244620-8244818)
chr5 (1-208)||(23495443-23495649)
chr5 (1-154)||(42792576-42792728)
chr5 (1-208)||(36712548-36712754)
chr5 (22-211)||(22510097-22510286)
chr5 (1-191)||(5590612-5590802)
chr5 (37-207)||(13537860-13538030)
chr5 (4-95)||(22922649-22922740)
chr5 (57-211)||(24095343-24095497)
chr5 (2-76)||(38608363-38608437)
chr5 (20-208)||(33622389-33622576)
chr5 (4-95)||(22922052-22922143)
chr5 (111-163)||(31022305-31022356)
[»] chr8 (17 HSPs)
chr8 (1-207)||(18573916-18574122)
chr8 (4-211)||(7999746-7999953)
chr8 (1-194)||(24033860-24034053)
chr8 (1-206)||(2085642-2085847)
chr8 (1-216)||(18040378-18040586)
chr8 (1-208)||(32008912-32009118)
chr8 (30-211)||(33273417-33273598)
chr8 (1-208)||(41280706-41280914)
chr8 (1-211)||(7454547-7454771)
chr8 (1-211)||(24060653-24060863)
chr8 (4-207)||(22609393-22609594)
chr8 (1-211)||(11709463-11709685)
chr8 (56-208)||(10532638-10532790)
chr8 (71-211)||(17775785-17775924)
chr8 (1-94)||(10532801-10532894)
chr8 (1-95)||(25820811-25820905)
chr8 (88-148)||(1038938-1038998)
[»] chr1 (12 HSPs)
chr1 (4-201)||(9859069-9859266)
chr1 (4-216)||(19442001-19442212)
chr1 (4-207)||(19967318-19967520)
chr1 (1-205)||(38621898-38622102)
chr1 (4-216)||(8995329-8995540)
chr1 (56-211)||(21815451-21815606)
chr1 (1-88)||(8990779-8990866)
chr1 (1-207)||(24973786-24973991)
chr1 (1-211)||(21817627-21817843)
chr1 (39-203)||(33028926-33029090)
chr1 (56-208)||(49472353-49472504)
chr1 (111-163)||(18732557-18732608)
[»] scaffold0150 (1 HSPs)
scaffold0150 (5-216)||(29947-30158)
[»] scaffold0008 (2 HSPs)
scaffold0008 (1-219)||(253408-253626)
scaffold0008 (1-208)||(242768-242975)
[»] chr3 (5 HSPs)
chr3 (1-211)||(19790370-19790580)
chr3 (5-211)||(22915151-22915355)
chr3 (1-203)||(16852911-16853113)
chr3 (14-208)||(16914814-16915008)
chr3 (19-210)||(44635860-44636052)
[»] scaffold0280 (1 HSPs)
scaffold0280 (5-216)||(930-1141)
[»] scaffold0170 (1 HSPs)
scaffold0170 (5-216)||(16206-16416)
[»] scaffold0026 (1 HSPs)
scaffold0026 (7-211)||(151186-151389)
[»] scaffold0042 (2 HSPs)
scaffold0042 (4-211)||(68771-68978)
scaffold0042 (1-118)||(74940-75057)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-211)||(4091-4301)
[»] scaffold0034 (2 HSPs)
scaffold0034 (1-135)||(47386-47520)
scaffold0034 (135-216)||(56248-56329)
[»] scaffold0483 (1 HSPs)
scaffold0483 (15-211)||(9243-9435)
[»] scaffold0989 (1 HSPs)
scaffold0989 (1-185)||(1444-1626)
[»] scaffold0058 (3 HSPs)
scaffold0058 (1-159)||(1703-1861)
scaffold0058 (135-210)||(15528-15603)
scaffold0058 (8-54)||(15467-15513)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-208)||(37124-37330)
[»] scaffold0111 (1 HSPs)
scaffold0111 (1-211)||(2723-2935)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-211)||(10767-10977)
[»] scaffold0265 (2 HSPs)
scaffold0265 (56-211)||(17203-17358)
scaffold0265 (1-211)||(14966-15182)
[»] scaffold0192 (1 HSPs)
scaffold0192 (1-211)||(12418-12625)
[»] scaffold0084 (1 HSPs)
scaffold0084 (13-211)||(54499-54696)
[»] scaffold0362 (1 HSPs)
scaffold0362 (21-211)||(7244-7435)
[»] scaffold1272 (1 HSPs)
scaffold1272 (132-211)||(1969-2048)
[»] scaffold0063 (2 HSPs)
scaffold0063 (19-208)||(36678-36866)
scaffold0063 (111-200)||(49133-49222)
[»] scaffold0233 (1 HSPs)
scaffold0233 (17-47)||(16052-16082)
[»] scaffold0011 (1 HSPs)
scaffold0011 (18-210)||(20181-20372)


Alignment Details
Target: scaffold0002 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 391554 - 391770
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||  |||    
T  391554 tggcacacctggctctggcggttacgaaattatgggaagtgtaaccgccagagagtttattgcgggaacctgcagagagacgttgtggttcgtttgaact 391653  T
Q  101 agtctcgttggctccgtgca-ccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaa 199  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||    
T  391654 agtctcgctcgctccgtgcacccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttggggtttggattgtattggacctaa 391753  T
Q  200 gtaaatgggccacaggt 216  Q
    |||||||| ||||||||    
T  391754 gtaaatggaccacaggt 391770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 380856 - 381068
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||||| ||||||||||| ||| |||||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||  ||     
T  380856 tggcacacctggctctggaggttacgaaattgtgagaagtgtaaccgccagagactttattgcgggaacgtgtagagagacgttgtggttcgtttgaacc 380955  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    ||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||    
T  380956 agtctcgctcgctccgtgcaccccccttgcaggaaaggggtgtggtgcaagtaagtttgccaaccatggtgtttgggctttggattgtattgggcgtaag 381055  T
Q  201 taaatgggccaca 213  Q
    |||||||||||||    
T  381056 taaatgggccaca 381068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 12885375 - 12885581
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||  ||     
T  12885375 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcaaagagacgttgtggttcgtttgaacc 12885474  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||| || ||||| |||| |||||||||||| ||||||| |||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||    
T  12885475 agtctctttcgctccatgca-cccccttgcggggaaggggtatgttgcaagtaactttgccaaacgtggtgtttgggttttggattgtattgggcctaag 12885573  T
Q  201 taaatggg 208  Q
    ||||||||    
T  12885574 taaatggg 12885581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 10985818 - 10985604
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||  ||     
T  10985818 tggcacacctggctctcgcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaacc 10985719  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    ||||||||| |||| ||||| |||||||| ||| || ||||||||  ||||||| |||||||| ||||||||||||  ||||||||||||||||||||||    
T  10985718 agtctcgttcgctctgtgca-cccccttgtggggaaagggtgtgtcacaagtaactttgccaaacgtggtgtttgacctttggattgtattgggcctaag 10985620  T
Q  201 taaatgggccacaggt 216  Q
    ||||||||||| ||||    
T  10985619 taaatgggccaaaggt 10985604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 16396371 - 16396161
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||| |||||||| ||| |||||| ||||||||||||||| |||||  |||||||||||||| || ||||||||||||||||||| ||  ||     
T  16396371 tggcacacctgactctggcgattaggaaatcatgggaagtgtaaccgccagagtgtttattgcgggaacgtgtagagagacgttgtggttcgcttgaacc 16396272  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    ||||||| | ||||||||||||||||||| ||||||||||||||| |||||||| |||||||| ||||||||||  | ||||||||||||||||||||||    
T  16396271 agtctcgcttgctccgtgcaccccccttgtgggaaaggggtgtgtcgcaagtaactttgccaaacgtggtgttttggctttggattgtattgggcctaag 16396172  T
Q  201 taaatgggcca 211  Q
    |||||||||||    
T  16396171 taaatgggcca 16396161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 3268432 - 3268644
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagt 103  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || ||| |||||||||||||| |||||||||||||||||||||||||  || |||    
T  3268432 cacacctggctctggcggttacgtaatcgtgggaagtgtaaccgccatagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaaccagt 3268531  T
Q  104 ctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaa 203  Q
    |||  | ||||||||||||||||||| | | |||||||||||  ||||||| ||||||||    |||||||| | | |||||||| ||| ||||||||||    
T  3268532 ctctgtcgctccgtgcaccccccttgtgtggaaggggtgtgtcacaagtaattttgccaaaatcggtgtttgggctgtggattgttttgagcctaagtaa 3268631  T
Q  204 atgggccacaggt 216  Q
    |||||||| ||||    
T  3268632 atgggccaaaggt 3268644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 12217656 - 12217864
Alignment:
Q  7 acctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctc 106  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||  || ||||||    
T  12217656 acctggctctggcggttacgaaatcgtaggaagtgtaaccgccagagagtttattgcaggaacgtgcagagagacgttgtggttcgtttgaaccagtctc 12217755  T
Q  107 gttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatg 206  Q
      | |||||||||| ||||| || | | |||||||||||||||||||| ||||| || || |||||||| | | ||||||||||| || |||||||||||    
T  12217756 tgtcgctccgtgca-cccccatgtgtggaaggggtgtgttgcaagtaattttgctaaacgcggtgtttgggctgtggattgtattaggactaagtaaatg 12217854  T
Q  207 ggccacaggt 216  Q
    ||||| ||||    
T  12217855 ggccaaaggt 12217864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 21332649 - 21332439
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||||||| |||||||||| |||||||| |||||| |||| | ||||||| |||||| || ||||||||||||||||||||||  ||     
T  21332649 tggcacacctggctctggcgcttacgaaatcatgggaagtataaccgccagaaagtttattgtgggaacgtgtagagagacgttgtggttcgtttgaacc 21332550  T
Q  101 agtctcgttggctccgtgcaccccccttgcg-ggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaa 199  Q
    |||||| || |||| ||||| |||||||| | |||||||||||||| |||||||| |||||||| ||| |||||||   |||| |||||||||| |||||    
T  21332549 agtctctttcgctctgtgca-cccccttgtgtggaaaggggtgtgtcgcaagtaactttgccaaacgtagtgtttggactttgaattgtattggacctaa 21332451  T
Q  200 gtaaatgggcca 211  Q
    ||||||||||||    
T  21332450 gtaaatgggcca 21332439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 25239789 - 25239999
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| |||||||||||| |||||||||||||||| | | || |||||||||||||| || | |||||| ||| |||||||||  ||     
T  25239789 tggcacaccttactctgacggttacgaaattgtgggaagtgtaaccgcctgtgagtttattgcgggaacgtggaaagagactttggggttcgtttgaacc 25239888  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||| || | ||||||||||||||| ||| ||||| ||||||| || ||||| |||| ||| ||||||||||  | |||||| |||||||||||||||    
T  25239889 agtctctttcgttccgtgcacccccctcgcgtgaaagaggtgtgtcgcgagtaattttgtcaaacgtggtgtttaggctttggagtgtattgggcctaag 25239988  T
Q  201 taaatgggcca 211  Q
    |||||||||||    
T  25239989 taaatgggcca 25239999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 45313241 - 45313447
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||  |||||| |||||| |||||||||||||||| ||||||||  ||     
T  45313241 tggcacaccaggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagattattg-gggaacgtgcagagagacgttgtagttcgtttgaacc 45313339  T
Q  101 agtc-tcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaa 199  Q
    |||| | | | |||||||||| ||| || ||||  ||||||||||| ||||||||  ||||||| | ||||| ||| | |||| ||||||||||||||||    
T  45313340 agtctttgctcgctccgtgca-ccctctcgcggagaaggggtgtgtcgcaagtaatgttgccaaacatggtgcttgggctttgaattgtattgggcctaa 45313438  T
Q  200 gtaaatggg 208  Q
    |||||||||    
T  45313439 gtaaatggg 45313447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 9901806 - 9901599
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||  |||||  ||||||||||||  | ||||||||||||||||||| |||  ||     
T  9901806 tggcacacctggctctgacggttacgaaatcgtgggacgtgtaaccgctagagagattattgcgggaatgtccagagagacgttgtggttcatttgaacc 9901707  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
      ||| | | |||||||||| ||||||||| || ||| ||||||| ||||||||  ||||||| |||| | |||| | ||| |||||||||| |||||||    
T  9901706 gatctagctcgctccgtgca-cccccttgcagggaagaggtgtgtcgcaagtaatattgccaaacgtgatatttgcgcttttgattgtattgagcctaag 9901608  T
Q  201 taaatgggc 209  Q
    |||||||||    
T  9901607 taaatgggc 9901599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 3270641 - 3270765
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||  ||||| |||||||||||||| || || |||||||||||||||||||  ||     
T  3270641 tggcacacctggctctggtggttacgaaatcgtgggaagtgtaaccgctagagagtttattgcgggaacgtgtagtgagacgttgtggttcgtttgaacc 3270740  T
Q  101 agtctcgttggctccgtgcaccccc 125  Q
    ||||||  | |||||||||||||||    
T  3270741 agtctctgttgctccgtgcaccccc 3270765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 211
Target Start/End: Complemental strand, 26780917 - 26780710
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagt 103  Q
    |||||| | |||||| |||||||||| ||||||||||||||||| ||||||  ||||||||||||| |||||||| ||||||||||||||||   |  |     
T  26780917 cacaccagactctggtggttacgaaaacgtgggaagtgtaaccgccagagagattattgcgggaacgtgcagagaaacgttgtggttcgtttgagccggc 26780818  T
Q  104 ctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaa 203  Q
    || |||  |||| | |||||||||  | |  ||||||||||| ||||||||  ||||||| ||||||||||| | |||| || |||||||||||| ||||    
T  26780817 cttgttctctccctacacccccctcacagagaaggggtgtgtagcaagtaatgttgccaaacgtggtgtttgggctttgaatagtattgggcctatgtaa 26780718  T
Q  204 atgggcca 211  Q
    ||||||||    
T  26780717 atgggcca 26780710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 13861428 - 13861613
Alignment:
Q  21 gttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgca 120  Q
    ||||||||||||||||||||||||| | | | || |||||||||||||| || | |||||||||| |||||||||  ||  || || || | ||||||||    
T  13861428 gttacgaaatcgtgggaagtgtaactgcctgtgagtttattgcgggaacgtggaaagagacgttggggttcgtttgaaccggtatctttcgttccgtgca 13861527  T
Q  121 ccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatg 206  Q
    ||||||| ||| | ||||||||||| || ||||| ||| |||  ||||||||||| | ||||||| ||||||||||||||||||||    
T  13861528 cccccctcgcgtggaaggggtgtgtcgcgagtaattttaccagacgtggtgtttgggctttggatggtattgggcctaagtaaatg 13861613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 8082159 - 8082348
Alignment:
Q  21 gttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgca 120  Q
    ||||||||||||||| ||||||||||| ||||||| | ||||||||||| |||| | ||| ||| ||| ||||||  ||  |||  | | ||||||||||    
T  8082159 gttacgaaatcgtggaaagtgtaaccgccagagaaataattgcgggaacgtgcaaatagatgttatggctcgtttgaaccggtcctgcttgctccgtgca 8082258  T
Q  121 ccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcc 210  Q
    ||||| | |||| ||||||||  || ||||||||  |||| || ||||||||||| | ||||||||||||||||||||||| ||||||||    
T  8082259 cccccttcgcggaaaaggggtaagtcgcaagtaatgttgcaaaacgtggtgtttgggctttggattgtattgggcctaagtgaatgggcc 8082348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 17282595 - 17282400
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| |||||||||| ||||||||||||||||||   | |  |||||||||||||| || | |||||||||| ||||||||   ||     
T  17282595 tggcacaccttactctgacggttacgaattcgtgggaagtgtaaccgcttgtgggtttattgcgggaacgtggaaagagacgttggggttcgttagaacc 17282496  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcc 196  Q
    |||||| || | ||||||||||||||| ||| | ||||||||||| || ||||| |||||||| |||||||| || | |||||| |||||| ||||    
T  17282495 agtctctttcgttccgtgcacccccctcgcgtggaaggggtgtgtcgcgagtaattttgccaaacgtggtgtctgggctttggagtgtatttggcc 17282400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 28892022 - 28892213
Alignment:
Q  16 tggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctcc 115  Q
    |||| ||| ||||||||||||||||||||||  ||||||| | |||| || ||| |||| ||||||||||||||||||||  ||  |||| | | |||||    
T  28892022 tggcagttgcgaaatcgtgggaagtgtaaccaccagagaaataattgtggaaacgtgcaaagagacgttgtggttcgtttgaacaggtcttgcttgctcc 28892121  T
Q  116 gtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgg 207  Q
    |||||| ||| | ||||  ||||||| ||| ||||||||  ||| ||| ||||||||||||  ||| ||||||||||||||||| |||||||    
T  28892122 gtgcactcccttcgcggagaaggggtatgtcgcaagtaatgttggcaaacgtggtgtttgaactttagattgtattgggcctaaataaatgg 28892213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 15427790 - 15427979
Alignment:
Q  16 tggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctcc 115  Q
    ||||||||||||||| |||| || ||||| ||  |||||| | ||||||||||| |||| ||| ||||||||| ||||    ||| |||||| | |||||    
T  15427790 tggcggttacgaaatagtgg-aactgtaaacgctagagaaataattgcgggaacgtgcaaagaaacgttgtggctcgtaggaactggtctcgcttgctcc 15427888  T
Q  116 gtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatggg 208  Q
    |||||||||  | ||||||||||||||||| |||| |||  |||  || |||||| | |  |  |||||||||||||||||||||||||||||    
T  15427889 gtgcacccctttcgcgggaaaggggtgtgtcgcaaataatattgtgaaacgtggtatat--ggcttggattgtattgggcctaagtaaatggg 15427979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 15434408 - 15434597
Alignment:
Q  16 tggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctcc 115  Q
    ||||||||||||||| |||| || ||||| ||  |||||| | ||||||||||| |||| ||| ||||||||| ||||    ||| |||||| | |||||    
T  15434408 tggcggttacgaaatagtgg-aactgtaaacgctagagaaataattgcgggaacgtgcaaagaaacgttgtggctcgtaggaactggtctcgcttgctcc 15434506  T
Q  116 gtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatggg 208  Q
    |||||||||  | ||||||||||||||||| |||| |||  |||  || |||||| | |  |  |||||||||||||||||||||||||||||    
T  15434507 gtgcacccctttcgcgggaaaggggtgtgtcgcaaataatattgtgaaacgtggtatat--ggcttggattgtattgggcctaagtaaatggg 15434597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 26778894 - 26778759
Alignment:
Q  76 agagacgttgtggttcgttttcactagtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttg 175  Q
    ||||||||||||||||||||  ||  |||| ||| |||  |||||||||||| ||||  |||||||| || ||||||||  ||| ||| | |||||||||    
T  26778894 agagacgttgtggttcgtttgaaccggtcttgttcgctatgtgcacccccctcgcggagaaggggtgggtcgcaagtaatgttgtcaaacatggtgtttg 26778795  T
Q  176 agatttggattgtattgggcctaagtaaatgggcca 211  Q
    || |||| || |||||| ||||||||||||| ||||    
T  26778794 agctttgaatagtattgagcctaagtaaatgagcca 26778759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 49402787 - 49402866
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagaga 80  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||||||| || |||  ||||||||| ||| ||||||||||    
T  49402787 tggcacaccaggctctggcggttacgagatcgtggaaagtgtaaccgccatagagattattgcggaaacgtgcagagaga 49402866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 18284605 - 18284510
Alignment:
Q  116 gtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    |||||| ||||| ||| | ||||||||||| |  ||||| |||||||| |||| |||||| | ||||||| ||||||||||||| |||||||||||    
T  18284605 gtgcactcccctcgcgtggaaggggtgtgtcgtgagtaattttgccaaacgtgatgtttgggctttggatggtattgggcctaattaaatgggcca 18284510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 211
Target Start/End: Original strand, 3270771 - 3270801
Alignment:
Q  181 tggattgtattgggcctaagtaaatgggcca 211  Q
    |||||||||||||||||||||||||||||||    
T  3270771 tggattgtattgggcctaagtaaatgggcca 3270801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 8168007 - 8168057
Alignment:
Q  158 tgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatggg 208  Q
    |||||| | ||||||||| | ||||||||||||||| ||||||||||||||    
T  8168007 tgccaaacatggtgtttgggctttggattgtattggacctaagtaaatggg 8168057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 13033673 - 13033639
Alignment:
Q  17 ggcggttacgaaatcgtgggaagtgtaaccgtcag 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  13033673 ggcggttacgaaatcgggggaagtgtaaccgtcag 13033639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34845562 - 34845516
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccg 47  Q
    |||||||| ||  |||| |||||||||||||||||||||||||||||    
T  34845562 tggcacacatgtgtctgacggttacgaaatcgtgggaagtgtaaccg 34845516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 15455536 - 15455629
Alignment:
Q  2 ggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttt 95  Q
    ||||||||||  | ||||||||| |||||  |||||||||||| ||  |||||| | ||||| | ||| |||| ||||||||||||| ||||||    
T  15455536 ggcacacctgtgtttggcggttatgaaataatgggaagtgtaaacgcaagagaaataattgcagaaacgtgcaaagagacgttgtggctcgttt 15455629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 22705694 - 22705900
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||| ||||| |||||||| ||||||||||||||||  |||    
T  22705694 tggcacacctggctctggcggttacgaaatcatgggaagtgtaaccggtagagaatttattgcaggaacgtgcagagaaacgttgtggttcgtttgaact 22705793  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||| || ||||||||||||| ||||||  | |||||||||||||||||||| |||| ||| ||||||||| ||  ||||||||||||||||||||||    
T  22705794 agtctctttcgctccgtgcacccgccttgcatggaaggggtgtgttgcaagtaactttgtcaaacgtggtgttgga-ctttggattgtattgggcctaag 22705892  T
Q  201 taaatggg 208  Q
    ||||||||    
T  22705893 taaatggg 22705900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 21802545 - 21802755
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||||| |||||||||||||| ||||||||||| |  ||||| ||||||||| |||||||||||||||||||||||||||| |  ||     
T  21802545 tggcacacctggctctggtggttacgaaatcgtaggaagtgtaacagcgagagagtttattgcgagaacctgcagagagacgttgtggttcgtctgaacc 21802644  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||| || ||||||||||||||||||||| | |||| |||||||| |||||| |||| ||| ||||||||||||| ||| ||||||||| ||||||||    
T  21802645 agtctccttcgctccgtgcaccccccttgcgtggaaggcgtgtgttgaaagtaactttgacaaacgtggtgtttgagctttagattgtattcggcctaag 21802744  T
Q  201 taaatgggcca 211  Q
    |||||| ||||    
T  21802745 taaatgagcca 21802755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 7595446 - 7595658
Alignment:
Q  3 gcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactag 102  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||  ||  |    
T  7595446 gcacacctggcgctggatgttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacattgtggttcgtttgaaccgg 7595545  T
Q  103 tctcgttggctccgtgcacccccct----tgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggccta 198  Q
    ||||| | ||||||||||||||||     || ||| ||||||||||||||||||||||||||||| |||||||||| || |||| ||||||||||||||     
T  7595546 tctcgctcgctccgtgcacccccccctcctgtggggaaggggtgtgttgcaagtaagtttgccaagcgtggtgtttaagctttgaattgtattgggcctg 7595645  T
Q  199 agtaaatgggcca 211  Q
    |||||||||||||    
T  7595646 agtaaatgggcca 7595658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 4 - 208
Target Start/End: Original strand, 29164947 - 29165150
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagt 103  Q
    |||||||| |||| |  ||||||||||||||||||||||||| |  ||||| |||||||||||||| |||||||||||||||||||||||||  || |||    
T  29164947 cacacctgactctagaagttacgaaatcgtgggaagtgtaactgctagagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaaccagt 29165046  T
Q  104 ctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaa 203  Q
    |||||| |||||||||| |||||||| |||||||||||||||  ||||||| |||||||| ||||||||||| | ||||| ||||||||||||||| |||    
T  29165047 ctcgttcgctccgtgca-cccccttgtgggaaaggggtgtgtcacaagtaactttgccaaacgtggtgtttgggctttgggttgtattgggcctaaataa 29165145  T
Q  204 atggg 208  Q
    |||||    
T  29165146 atggg 29165150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 2250096 - 2249892
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||| |||| |||||||||| |||||||||||| ||||||||  |||||  ||||||||||||| |||||||||||||||||||||||||  ||     
T  2250096 tggcacaccaggctttggcggttacaaaatcgtgggaattgtaaccgctagagatattattgcgggaacgtgcagagagacgttgtggttcgtttgaacc 2249997  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    ||||| | | ||||||||||||||||||||||| ||||||||||| ||||||||  ||||||| |||||| |||||| |||| |||||||||||  ||||    
T  2249996 agtcttgcttgctccgtgcaccccccttgcggggaaggggtgtgtcgcaagtaatgttgccaaacgtggtatttgagctttgaattgtattgggaataag 2249897  T
Q  201 taaat 205  Q
    |||||    
T  2249896 taaat 2249892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 20093631 - 20093837
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||| || |||||||||||||||||||||||||||||  || |||  ||||||||||||  |||||||||||||||||||||||||  ||     
T  20093631 tggcacacctggccctagcggttacgaaatcgtgggaagtgtaaccaccaaagagcttattgcgggaatgtgcagagagacgttgtggttcgtttgaacc 20093730  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    ||||||  | |||||||||| ||| |||| | | ||||||| |||||||||||| |||| ||| |||||||||||   ||||||||||||||| ||||||    
T  20093731 agtctctgtcgctccgtgca-ccctcttgtgtggaaggggtttgttgcaagtaactttgacaaacgtggtgtttggactttggattgtattggacctaag 20093829  T
Q  201 taaatggg 208  Q
    ||||||||    
T  20093830 taaatggg 20093837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 30770291 - 30770087
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| | || ||| |||||||||||||| || ||||||||||||| ||||||||  ||     
T  30770291 tggcacacctggctctggcggttacgaaatcgtggaaagtgtaactgccaaagagtttattgcgggaacgtgtagagagacgttgt-gttcgtttgaacc 30770193  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||| | || |||||||||| |||||||| | | ||||||||||| |||||||| || | ||| |||| |||||| | |||| |||||||||||||||||    
T  30770192 agtccctttcgctccgtgca-cccccttgtgtggaaggggtgtgtcgcaagtaacttcgtcaaacgtgatgtttgggctttgaattgtattgggcctaag 30770094  T
Q  201 taaatgg 207  Q
    |||||||    
T  30770093 taaatgg 30770087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 9549072 - 9548854
Alignment:
Q  2 ggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcacta 101  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| |||||||  || |    
T  9549072 ggcacacctggctctagcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacgttgtgtttcgtttgaacca 9548973  T
Q  102 gtctcgttggctccgtg--------caccccccttgcggg-aaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattg 192  Q
    |||||| | ||||| ||        | ||||||||| ||| |||||||||||| |||||||| | | |||| ||||| ||||| | ||||||||||||||    
T  9548972 gtctcgcttgctccatgccccccccccccccccttgtgggtaaaggggtgtgtcgcaagtaactataccaaacgtggcgtttgggctttggattgtattg 9548873  T
Q  193 ggcctaagtaaatgggcca 211  Q
    || ||| ||||||||||||    
T  9548872 ggactacgtaaatgggcca 9548854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 211
Target Start/End: Complemental strand, 21801911 - 21801740
Alignment:
Q  40 tgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgcaccccccttgcgggaaaggg 139  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||  |   |||| | | ||||| | |||||||||||| ||| |||     
T  21801911 tgtaaccgccagagaacttattgcgggaacgtgcagagagacgttgtggttcgtttgaatcggtcttgctcgctccttacaccccccttgcaggagagga 21801812  T
Q  140 gtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    ||||||||||||||||||| |||| ||||||||||| | ||| ||| |||||||||||||||||||||||||    
T  21801811 gtgtgttgcaagtaagttttccaaacgtggtgtttgggttttagatagtattgggcctaagtaaatgggcca 21801740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 18153235 - 18153433
Alignment:
Q  13 ctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggc 112  Q
    ||||| |||||||||||| |||||||||||||||| | | || ||||||| |||||| || | |||||||||| |||||||||  || |||||| || |     
T  18153235 ctctgacggttacgaaatggtgggaagtgtaaccgcctgcgagtttattgtgggaacgtggaaagagacgttggggttcgtttgaaccagtctcttttgt 18153334  T
Q  113 tccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    ||||||||||||||| ||| | ||||||||||| || ||||| |||||||| | ||||||||| | |||| | ||||||||||||||||||||||||||    
T  18153335 tccgtgcacccccctcgcgtggaaggggtgtgtcgcgagtaattttgccaaacatggtgtttgggctttgtagtgtattgggcctaagtaaatgggcca 18153433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 38612656 - 38612859
Alignment:
Q  5 acacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtc 104  Q
    ||||| ||||||||||||||| ||||||||||||||||||| | ||||||  |||||| |||||| ||||||| |||||||||||||||||  ||  | |    
T  38612656 acaccaggctctggcggttacaaaatcgtgggaagtgtaactgccagagagattattgtgggaacgtgcagagggacgttgtggttcgtttgaaccggcc 38612755  T
Q  105 tcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaa 204  Q
      | | |||||||||| |||||| ||| | ||||||||| ||||||||||  ||||||| ||||||||||| | |||| || |||||| |||||||||||    
T  38612756 ctgcttgctccgtgcaaccccctcgcgaggaaggggtgttttgcaagtaatgttgccaaacgtggtgtttgggctttgaatagtattgagcctaagtaaa 38612855  T
Q  205 tggg 208  Q
    ||||    
T  38612856 tggg 38612859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 30765085 - 30764879
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||| | || | ||| ||||||||||||||||||||||||| ||||||| | ||||||||||  |||| |||||| |||||||||| ||  ||     
T  30765085 tggcacacctaggtccgacgggtacgaaatcgtgggaagtgtaaccgccagagaaataattgcgggaatgtgcaaagagacattgtggttcgcttgaacc 30764986  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    ||||  | | |||| |||||| ||||| ||||  ||||||| ||| |||||||| |||||||| ||||| |||| || || |||||||||||| ||||||    
T  30764985 agtcctgcttgctctgtgcactcccctcgcggtgaaggggtatgtcgcaagtaaatttgccaaacgtggagtttaagcttgggattgtattggacctaag 30764886  T
Q  201 taaatgg 207  Q
    |||||||    
T  30764885 taaatgg 30764879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 47295786 - 47295580
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| |||||||||||||||||||||||||| ||   | || |||||||||||||  || |||||||||||| |||||||||  ||     
T  47295786 tggcacaccttactctgacggttacgaaatcgtgggaagtgtaaacgcttgtgagtttattgcgggaaggtggagagagacgttggggttcgtttgaacc 47295687  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||| || | |||||||| |||||| ||| | || |||||||| || ||||| ||| |||| ||||||||||| | |||| | |||||||| ||||||    
T  47295686 agtctccttcgttccgtgca-ccccctcgcgtggaatgggtgtgtcgcgagtaatttttccaaacgtggtgtttgggctttgtagtgtattggacctaag 47295588  T
Q  201 taaatggg 208  Q
    ||||||||    
T  47295587 taaatggg 47295580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 21592982 - 21592770
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| ||||||| ||||||||||||||||||||||| |  |  ||||| ||||||| || | |||||||||| |||||||||  ||     
T  21592982 tggcacaccttactctgacggttacaaaatcgtgggaagtgtaaccgtctgttagcttattacgggaacgtggaaagagacgttggggttcgtttgaacc 21592883  T
Q  101 agtctcgttggctccgtgcacccccc--ttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggccta 198  Q
    |||||| || | ||||||||||||||  | ||| | ||||||||||| || ||||| || ||||| | |||||||||   ||||||| ||||||||||||    
T  21592882 agtctctttcgttccgtgcacccccccctcgcgtggaaggggtgtgtcgcgagtaatttagccaaacatggtgtttggactttggatggtattgggccta 21592783  T
Q  199 agtaaatgggcca 211  Q
    ||| |||||||||    
T  21592782 agtgaatgggcca 21592770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 18185720 - 18185813
Alignment:
Q  2 ggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttt 95  Q
    |||||||||  ||||| |||||||||||||| ||||||||||||||   | || |||||||||||||| || | |||||||||| |||||||||    
T  18185720 ggcacaccttactctgacggttacgaaatcgcgggaagtgtaaccgcttgcgagtttattgcgggaacatggaaagagacgttggggttcgttt 18185813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28794132 - 28794079
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagaga 54  Q
    |||||||| ||  |||| ||||||||||||||||||||||||||||| ||||||    
T  28794132 tggcacacgtgtgtctgacggttacgaaatcgtgggaagtgtaaccgccagaga 28794079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 23755923 - 23755708
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| || ||| |||||||||||||| ||||||||||||||||||||| |||  ||     
T  23755923 tggcacacctggctctagcggttacgaaatcgtgggaagtgtaaccgccatagagtttattgcgggaacgtgcagagagacgttgtggttcttttgaacc 23755824  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||| | || ||||||||||||||||||||  | |||||||||||||||||||| ||| |||| | ||||||||| | |||||||||||||||||||| |    
T  23755823 agtcactttcgctccgtgcaccccccttgcttggaaggggtgtgttgcaagtaactttaccaaacatggtgtttgggctttggattgtattgggcctagg 23755724  T
Q  201 taaatgggccacaggt 216  Q
    ||||||||||| ||||    
T  23755723 taaatgggccaaaggt 23755708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 3770355 - 3770570
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||  ||||| |||||||||| ||| ||||||||||||||| |||||||||  ||     
T  3770355 tggcacacctggctctggcggttacaaaatcgtggaaagtgtaaccgctagagagtttattgcggaaacgtgcagagagacgttgaggttcgtttgaacc 3770454  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    ||||||  | ||||| ||||||||||||| | | |||||||||||||||||||| |||||||| ||||||||||| | |||| |||||||||||||||||    
T  3770455 agtctctctcgctccatgcaccccccttgagtggaaggggtgtgttgcaagtaactttgccaaacgtggtgtttgggctttgaattgtattgggcctaag 3770554  T
Q  201 taaatgggccacaggt 216  Q
    ||||||||||| ||||    
T  3770555 taaatgggccaaaggt 3770570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 42534227 - 42534032
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||  ||     
T  42534227 tggcacatctggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacgttgtggctcgtttgaaca 42534128  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcc 196  Q
     |||||| | ||| ||||||||||||||| |||||||||| |||| ||||||||| ||| ||| ||||||||||| | ||||||||||||||||||    
T  42534127 ggtctcgctcgctacgtgcaccccccttgtgggaaaggggagtgtcgcaagtaaggttgacaaacgtggtgtttgggctttggattgtattgggcc 42534032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 25134038 - 25133822
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||  ||     
T  25134038 tggcacacctggctctggcggttacgaaatcgtggtaagtgtaaccgccagagagtttattgcgggaacgtgcaaagagacgttgtggttcgtttgaacc 25133939  T
Q  101 agtctcgttggctccgtgcacc---------ccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtatt 191  Q
    ||||||| | ||||||||||||         ||||||   |||||||||||||| |||||||| |||||||| ||||||||||| | ||||||||||| |    
T  25133938 agtctcgcttgctccgtgcaccccccaccccccccttttaggaaaggggtgtgtcgcaagtaactttgccaaacgtggtgtttgggctttggattgtaat 25133839  T
Q  192 gggcctaagtaaatggg 208  Q
    |||||||||||||||||    
T  25133838 gggcctaagtaaatggg 25133822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 26155087 - 26154880
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||| |||||  |||||||||||||| | || ||||| ||||||||||||||  |||    
T  26155087 tggcacacctggctatggtggttacgaaatcgtgggaagtgtaaccgccagagcgtttattgcgggaacgtacaaagagatgttgtggttcgtttgaact 26154988  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    | |||| || ||||||||||||||||||| | | ||||| ||||| |||||||| |||||||| ||||||||||||  |||  ||| |||||| ||||||    
T  26154987 aatctctttcgctccgtgcaccccccttgtgtggaagggatgtgtcgcaagtaactttgccaaacgtggtgtttgaactttaaattatattggacctaag 26154888  T
Q  201 taaatggg 208  Q
    ||||||||    
T  26154887 taaatggg 26154880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41266300 - 41266094
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||| | |||| |||||||||||||| |||||||||||||||||||||||||  ||     
T  41266300 tggcacacctggctctggcggttacgatatcgtgagaagtgtaaccgcccgagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaacc 41266201  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaa-ggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaa 199  Q
    |||| | || |||||||||| |||| ||||  |||| |||| ||||||||||||| |||||||| | |||||||||   ||||||| |||||||||||||    
T  41266200 agtcac-ttcgctccgtgca-ccccattgcctgaaagggggggtgttgcaagtaactttgccaaacatggtgtttggattttggatcgtattgggcctaa 41266103  T
Q  200 gtaaatggg 208  Q
    |||||||||    
T  41266102 gtaaatggg 41266094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 3105318 - 3105505
Alignment:
Q  20 ggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgc 119  Q
    ||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||  ||  |||||| | |||| ||||    
T  3105318 ggttatgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacgttgtggctcgtttgaaccggtctcgctcgctctgtgc 3105417  T
Q  120 accccccttgcgggaaa-ggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgg 207  Q
    | | |||||| |||||| ||||||||| ||||||||  ||| ||| ||||||||||| | |||||||||| ||||||||||||||||||    
T  3105418 a-ctcccttgtgggaaagggggtgtgtcgcaagtaatgttgtcaaacgtggtgtttgggctttggattgtgttgggcctaagtaaatgg 3105505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 207
Target Start/End: Original strand, 19092819 - 19093021
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagt 103  Q
    |||||| | |||| |||||| |||| | |||||||||||||||| ||||||  ||||||||||||| |||||||||||||||||||||||||  ||||||    
T  19092819 cacaccagactctcgcggtttcgaacttgtgggaagtgtaaccgccagagagattattgcgggaacgtgcagagagacgttgtggttcgtttgaactagt 19092918  T
Q  104 ctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaa 203  Q
    || ||| |||||||||| |||||| | ||  ||||| ||||| ||||||||  || |||| | ||||||||| | |||| ||  ||||||||||||||||    
T  19092919 cttgttcgctccgtgca-ccccctcgtggagaagggatgtgtcgcaagtaatgttaccaaacatggtgtttgggctttgaataatattgggcctaagtaa 19093017  T
Q  204 atgg 207  Q
    ||||    
T  19093018 atgg 19093021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 23929892 - 23930014
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| | |||| ||||||| |||||| ||||||||||| ||||||||| |||  ||     
T  23929892 tggcacacctggctctggcggttacggaatcgtgggaagtgtaaccgccggagagtttattgtgggaacgtgcagagagacattgtggttcatttgaacc 23929991  T
Q  101 agtctcgttggctccgtgcaccc 123  Q
     |||||| | |||||||||||||    
T  23929992 ggtctcgctcgctccgtgcaccc 23930014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 29568414 - 29568503
Alignment:
Q  5 acacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttt 95  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||| ||||| || ||||||||||||||| ||||||    
T  29568414 acacctggctctggcggttacgaaatcgtgggaagtgtaaccgctagagagtttattgc-ggaacgtgtagagagacgttgtggctcgttt 29568503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 29569029 - 29569136
Alignment:
Q  96 tcactagtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggc 195  Q
    ||||| |||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||  | |||||||  ||||| ||    
T  29569029 tcactggtctcgctcgctccgtgcaccccctttgcgggaaaggggtgtgttgcaagtaagtttgccaaatgtggtgtttaggctttggatgatattgagc 29569128  T
Q  196 ctaagtaa 203  Q
    | ||||||    
T  29569129 caaagtaa 29569136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27347264 - 27347473
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  | ||| ||||||||||||| ||||||||||||| | |   || |||||||||||||| || | |||||||||| |||||||||  ||     
T  27347264 tggcacacctaacactgacggttacgaaatcatgggaagtgtaactgcctatgagtttattgcgggaacgtggaaagagacgttggggttcgtttgaacc 27347363  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||| || | |  ||||||||||  |   |||| ||||||||| || ||||| |||||||| |||| |||||| | ||||||| ||||||||| ||||    
T  27347364 agtctctttcgttatgtgcaccccctctcatggaa-ggggtgtgtcgcgagtaattttgccaaacgtgatgtttgggctttggatggtattgggcttaag 27347462  T
Q  201 taaatgggcca 211  Q
    |||||||||||    
T  27347463 taaatgggcca 27347473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 23932902 - 23932984
Alignment:
Q  129 gcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    ||||| ||||||||||| ||||||||  ||| ||  ||||||||||| | ||||||||||||| |||||||||||||||||||    
T  23932902 gcggggaaggggtgtgtcgcaagtaatgttgtcagacgtggtgtttgggctttggattgtattaggcctaagtaaatgggcca 23932984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 22452848 - 22452716
Alignment:
Q  76 agagacgttgtggttcgttttcactagtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttg 175  Q
    ||||||||||  |||| |||  ||| |||||| | ||||||||||| ||||| ||||| || ||||||||||| |||||  ||| ||| |||||| ||||    
T  22452848 agagacgttgcagttcatttgaactggtctcgcttgctccgtgcactcccctcgcggggaa-gggtgtgttgcgagtaatgttgtcaaacgtggtatttg 22452750  T
Q  176 agatttggattgtattgggcctaagtaaatgggcc 210  Q
     | |||||||| ||||| ||||||| |||||||||    
T  22452749 -ggtttggattatattgagcctaagcaaatgggcc 22452716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 18736095 - 18736305
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||||||||||||||||| ||||||||| ||| || |||||| |||||||||||||| || ||||||||||||||| ||||||  ||     
T  18736095 tggcacacctggctctggcggttacgaaattgtgggaagtctaatcgccagagagtttattgcgggaacgtgtagagagacgttgtggctcgtttgaacc 18736194  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    | ||||| | |||||||||||||| |||||||||||||||| | ||||||||||||||||||| ||||||||||| | |||||||  |||||||||||||    
T  18736195 aatctcgctcgctccgtgcacccctcttgcgggaaaggggtatattgcaagtaagtttgccaaacgtggtgtttgggctttggatattattgggcctaag 18736294  T
Q  201 taaatgggcca 211  Q
    |||||||||||    
T  18736295 taaatgggcca 18736305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 18729020 - 18729226
Alignment:
Q  5 acacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtc 104  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| || ||| |||||||||| ||| |||||||||||||||||| || |||  ||  |||    
T  18729020 acacctggctctggcgggtacaaaatcgtgggaagtgtaaccgccatagagtttattgcggaaacgtgcagagagacgttgtggctcctttgaaccggtc 18729119  T
Q  105 tcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaa 204  Q
    ||||| ||||||||||||| ||||||||||||| |||||||| |||||||||||| ||| ||||||||||| | ||||||| ||||| ||||||||||||    
T  18729120 tcgttcgctccgtgcaccctccttgcgggaaagcggtgtgttacaagtaagtttgtcaaacgtggtgtttgggttttggatagtattaggcctaagtaaa 18729219  T
Q  205 tgggcca 211  Q
    |||||||    
T  18729220 tgggcca 18729226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 28 - 216
Target Start/End: Complemental strand, 21508716 - 21508528
Alignment:
Q  28 aatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgcacccccct 127  Q
    |||||||||||||||||||| || ||| |||||||| ||||| |||||||||||| ||||||||| ||  || |||||| || |||||||||||||||||    
T  21508716 aatcgtgggaagtgtaaccgccatagagtttattgcaggaacgtgcagagagacgctgtggttcgattgaaccagtctctttcgctccgtgcacccccct 21508617  T
Q  128 tgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggccacaggt 216  Q
    |||  | |||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  21508616 tgcatggaaggggtgtgttgcaagtaactttgtcaaacgtggtgtttgagctttggattgtattgggcctaagtaaatgggccaaaggt 21508528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 23574489 - 23574703
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||| |||||||||| |||||||| |||||| ||||||||||  |||||| ||||||||| |||| || ||||||||||||||||||||||  ||     
T  23574489 tggcacacttggctctggctgttacgaagtcgtggaaagtgtaaccaccagagagtttattgcgagaacatgtagagagacgttgtggttcgtttgaacc 23574588  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    ||||||||| |||||||||| | |||||| ||||||||||||| |  ||||||| |||| ||| ||||||||||| | ||||||||||||||||||||||    
T  23574589 agtctcgttcgctccgtgca-cgcccttgtgggaaaggggtgtatcacaagtaactttgtcaaacgtggtgtttgggctttggattgtattgggcctaag 23574687  T
Q  201 taaatgggccacaggt 216  Q
    ||||||||||| ||||    
T  23574688 taaatgggccaaaggt 23574703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 15119825 - 15119615
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||  ||||| |||||||||||||| |||||||||||||||||||||||||  ||     
T  15119825 tggcacacctggctctggcggttacaaaatcgtgggaagtataaccgctagagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaacc 15119726  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     ||||| ||  ||| |||||||||||||| | | |||||||||||   |||||| |||| ||| ||||||||||| | | ||||||||||||||||||||    
T  15119725 tgtctctttcactctgtgcaccccccttgtgtggaaggggtgtgtcataagtaactttgtcaaacgtggtgtttgggctctggattgtattgggcctaag 15119626  T
Q  201 taaatgggcca 211  Q
    |||||||||||    
T  15119625 taaatgggcca 15119615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 4409291 - 4409502
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||  || |  |||||||||||||| |||| ||||||||||||||||||||  ||     
T  4409291 tggcacaccttgctctggcggttacaaaatcgtgagaagtgtaaccgctagggcgtttattgcgggaacgtgcatagagacgttgtggttcgtttgaacc 4409390  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtg-tttgagatttggattgtattgggcctaa 199  Q
    |||||| || ||||||||||||||||||||| |||||||||||||  ||||||| |||| ||| ||||||| |||| | |||| ||  ||||||||||||    
T  4409391 agtctctttcgctccgtgcaccccccttgcgtgaaaggggtgtgtcacaagtaactttgtcaaacgtggtgttttgggctttgaatgatattgggcctaa 4409490  T
Q  200 gtaaatgggcca 211  Q
    ||||||||||||    
T  4409491 gtaaatgggcca 4409502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 12738590 - 12738760
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||| |||||| || || |||||||||||||||||||||||||   ||||| |||||||||||||| |||||||||||||||||||||||||  |||    
T  12738590 tggcacatctggctatgacgattacgaaatcgtgggaagtgtaacctctagagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaact 12738689  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtg 171  Q
    ||||| ||| ||||||| ||||||||||| ||||||||||||||| ||| |||| |||||||| |||||||    
T  12738690 agtcttgttcgctccgtacaccccccttgtgggaaaggggtgtgtcgcaggtaactttgccaaacgtggtg 12738760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 29095122 - 29094911
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||| | | || |||||||||||||| || | |||||||||| |||||||||  ||     
T  29095122 tggcacacctaactctgacggttacgaaatcgtgggaagtgtaaccgcctgtgagtttattgcgggaacgtggaaagagacgttggggttcgtttgaacc 29095023  T
Q  101 agtctcgttggctccgtgcacc-ccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaa 199  Q
     ||||| || | |||||||||| ||||| ||| | ||||||||||| || ||||| |||||||| ||||||||||| | ||||||| |||||||||||||    
T  29095022 ggtctctttcgttccgtgcaccccccctcgcgtggaaggggtgtgtcgcgagtaattttgccaaacgtggtgtttgggctttggatggtattgggcctaa 29094923  T
Q  200 gtaaatgggcca 211  Q
    || |||||||||    
T  29094922 gtgaatgggcca 29094911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 29482686 - 29482896
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||| ||| ||||||||||||||||||||||| |||| || ||||| |||||||||||||| |||||||||||||||||| ||||||  ||     
T  29482686 tggcacacctggttctagcggttacgaaatcgtgggaagtataactgtgagagagtttattgcgggaacatgcagagagacgttgtggctcgtttgaacc 29482785  T
Q  101 agtctcgttggctccgtgcaccccccttgcggg-aaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaa 199  Q
     |||||| | ||||||||||  | | ||| ||| |||||||||||| ||||||||  ||||||| ||||| ||||| | |||||||||| |||||||| |    
T  29482786 ggtctcgctcgctccgtgca-gcactttgtgggaaaaggggtgtgtcgcaagtaatgttgccaaacgtggcgtttgggctttggattgtgttgggcctga 29482884  T
Q  200 gtaaatgggcca 211  Q
    ||||||||||||    
T  29482885 gtaaatgggcca 29482896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 14910701 - 14910908
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||| | |||||||| |||||||||| |||||||||||||||| || ||| |||||||||||||| |||||||||||||||||||||||||  ||     
T  14910701 tggcacacatcgctctggcagttacgaaattgtgggaagtgtaaccgccatagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaacc 14910800  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     |||| | | ||||||||||||||| ||  ||| ||||||||||| |||| |||  |||||||  ||||||||||   |||||||| ||||| |||||||    
T  14910801 ggtcttgctcgctccgtgcacccccatt-tggggaaggggtgtgtcgcaaataatgttgccaaatgtggtgtttggactttggattctattgtgcctaag 14910899  T
Q  201 taaatgggc 209  Q
    |||||||||    
T  14910900 taaatgggc 14910908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 201
Target Start/End: Complemental strand, 24438663 - 24438465
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagt 103  Q
    ||||||||||||| |||||||||||||||||||||||||||||| || ||| || ||||| ||||| |||| ||||||| ||||||||||||  || | |    
T  24438663 cacacctggctcttgcggttacgaaatcgtgggaagtgtaaccgccatagagttgattgcaggaacgtgcaaagagacgatgtggttcgtttgaaccaat 24438564  T
Q  104 ctcgttggctccgtgcac-cccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagt 201  Q
    ||| ||  | |||||||| |||||||||| | ||||||||||||||||||||  | |||||  |||||||||||  |||||||||||||||||| ||||    
T  24438563 ctctttctccccgtgcacacccccttgcgtggaaggggtgtgttgcaagtaacatagccaaatgtggtgtttgaactttggattgtattgggccaaagt 24438465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 18258699 - 18258492
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||||  ||||||||||| |||||||||||||| |  | ||| |||||||||||||  ||| ||||||||||||||||| |||  ||     
T  18258699 tggcacacctggctctgatggttacgaaattgtgggaagtgtaactgctaaagagtttattgcgggaatgtgcggagagacgttgtggttcctttgaacc 18258600  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     |||||  | ||| ||||||||||| ||| ||  || |||| || ||||||||||||||| || | ||||||||| | ||||||||||||||||||||||    
T  18258599 ggtctcactcgcttcgtgcaccccctttgtggagaaagggtatgctgcaagtaagtttgcaaaacatggtgtttgggctttggattgtattgggcctaag 18258500  T
Q  201 taaatggg 208  Q
    ||||||||    
T  18258499 taaatggg 18258492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 17757122 - 17756917
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| ||||||| ||||||||||||||||||||| | | || ||||||| |||||| || | |||||||||| |||||||||  ||     
T  17757122 tggcacaccttactctgacggttacaaaatcgtgggaagtgtaaccgcctgtgagtttattgtgggaacgtggaaagagacgttggggttcgtttgaacc 17757023  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    | |||  || | ||||||||||||||| ||| | ||||||||||| || ||||| |||||||| ||||||||||| | ||| ||||||||| ||||||||    
T  17757022 aatctttttcgttccgtgcacccccctcgcgtggaaggggtgtgtcgcgagtaattttgccaaacgtggtgtttgggctttcgattgtattaggcctaag 17756923  T
Q  201 taaatg 206  Q
    ||||||    
T  17756922 taaatg 17756917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 8306155 - 8306364
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||| |||| || |||| |||||| ||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||  ||||||  ||     
T  8306155 tggcacacctgactctagcagttatgaaatcatggaaagtgtaaccgccagagagtttattgcgggaacctacagagagacgttgtgactcgtttgaacc 8306254  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||| || |||| ||||| || |||||   ||||||||  |||||||||||| |||| ||| |||| |||||| | ||| ||| ||||||||||||||    
T  8306255 agtctctttcgctctgtgca-cctccttgtctgaaagggggatgttgcaagtaactttgtcaaacgtgatgtttgggctttagatcgtattgggcctaag 8306353  T
Q  201 taaatgggcca 211  Q
    || ||||||||    
T  8306354 tatatgggcca 8306364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 18014562 - 18014352
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||  ||||||  ||||||||||||| | |||  | || |||||||||||||  |||    
T  18014562 tggcacacctagctctggcggttacgaaatcgtgggaagtctaaccaccagagagattattgcgggaacgtacagtcaaacattgtggttcgtttgaact 18014463  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     |||| | | ||||||||||||||||| ||||| ||||||| ||| ||||||||  ||||||   || |||| ||   | |||||||||||| |||||||    
T  18014462 ggtcttgctcgctccgtgcacccccctcgcggggaaggggtttgtcgcaagtaatattgccacatgtagtgtctggtctgtggattgtattgagcctaag 18014363  T
Q  201 taaatgggcca 211  Q
    |||||||||||    
T  18014362 taaatgggcca 18014352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 15349731 - 15349523
Alignment:
Q  3 gcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgtttt-cacta 101  Q
    |||||||||| ||||||||||||||||||||||||||||||||||  |||||  |||||| |||||| |||| ||||| |||||||||||||||  ||      
T  15349731 gcacacctgggtctggcggttacgaaatcgtgggaagtgtaaccgcgagagagattattgtgggaacgtgcaaagagatgttgtggttcgttttgaaccg 15349632  T
Q  102 gtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagt 201  Q
    |||| |   |||| ||||||||||   |||    | |||||||||||||||||  ||||||| | ||||||||||  |||||||||||| ||||||||||    
T  15349631 gtcttgcatgctctgtgcaccccctccgcgatggaagggtgtgttgcaagtaatattgccaaacatggtgtttgatctttggattgtatcgggcctaagt 15349532  T
Q  202 aaatgggcc 210  Q
    ||| |||||    
T  15349531 aaacgggcc 15349523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 15369725 - 15369523
Alignment:
Q  5 acacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgtttt-cactagt 103  Q
    |||||| | ||||||||||||||||| || ||||||||||||| |||| |  ||||||||||||| |||| ||||| |||||||||||||||  ||  ||    
T  15369725 acacctaggtctggcggttacgaaattgtaggaagtgtaaccgccagacagattattgcgggaacgtgcaaagagaagttgtggttcgttttgaaccggt 15369626  T
Q  104 ctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaa 203  Q
    || ||  ||||| |||||| || | |||    | |||||||||||||| ||  ||||||| ||||||||||||| |||||||| |||||||| |||||||    
T  15369625 cttgtatgctccttgcaccgccttcgcgaaggaagggtgtgttgcaaggaatattgccaaacgtggtgtttgagctttggattatattgggcttaagtaa 15369526  T
Q  204 atg 206  Q
    |||    
T  15369525 atg 15369523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 7968599 - 7968470
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||| |||||||||||||||||| |||| ||||||||||| ||| |  ||||||| |||||| |||||||||||||||||||||||||  ||     
T  7968599 tggcacacctgactctggcggttacgaaattgtggaaagtgtaaccgccagggggtttattgtgggaacgtgcagagagacgttgtggttcgtttgaacc 7968500  T
Q  101 agtctcgttggctccgtgcaccccccttgc 130  Q
    |||||| || | ||||||||| | ||||||    
T  7968499 agtctctttcgttccgtgcactctccttgc 7968470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23524159 - 23524246
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtgg 88  Q
    |||||||||||||||||||||||| |||||||||| |||||||||| ||| ||| |||||||||||||| |||||||||| |||||||    
T  23524159 tggcacacctggctctggcggttaagaaatcgtggaaagtgtaaccatcaaagagtttattgcgggaacgtgcagagagaagttgtgg 23524246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 3876426 - 3876619
Alignment:
Q  14 tctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggct 113  Q
    |||||||||||||||||||| |||||||||| |||||||||  ||||||||||||  |||| ||||||||||| | || |||  ||   ||| | | |||    
T  3876426 tctggcggttacgaaatcgtaggaagtgtaatcgtcagagagattattgcgggaatatgcaaagagacgttgtagctcatttgaaccgatcttgcttgct 3876525  T
Q  114 ccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgg 207  Q
    |||||||||||| | ||||  ||||||| |||  |||||||||||||||| ||||  ||||| | || ||| ||| |||||||||| |||||||    
T  3876526 ccgtgcacccccttcgcggagaaggggtatgtcacaagtaagtttgccaaacgtgaagtttgggcttgggactgtgttgggcctaaataaatgg 3876619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 19860152 - 19860062
Alignment:
Q  5 acacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttt 95  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||  |||||| |||||| ||  ||||||||||| |||||||||    
T  19860152 acacctggctctggcggttacgaaatcgtgggaagtgtaaccaccagagagattattgtgggaacatgttgagagacgttgcggttcgttt 19860062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 15319079 - 15318988
Alignment:
Q  5 acacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgtttt 96  Q
    |||||| | ||||||||||||||||||||||||||||||||||  |||||  ||||||| ||||| |||| ||||| |||||||||||||||    
T  15319079 acacctaggtctggcggttacgaaatcgtgggaagtgtaaccgctagagagattattgcaggaacgtgcaaagagaagttgtggttcgtttt 15318988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 18043493 - 18043588
Alignment:
Q  121 ccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggccacaggt 216  Q
    ||||||||||| ||||||||||| | |||||||| |||||||| |||| |||||| | |||| || ||||||||||||||||||||||||| ||||    
T  18043493 ccccccttgcgtgaaaggggtgtatcgcaagtaactttgccaaacgtgatgtttgggctttgaatggtattgggcctaagtaaatgggccaaaggt 18043588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 23524248 - 23524330
Alignment:
Q  134 aaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggccacaggt 216  Q
    |||||||||||| |||||||| ||||| || ||||||||||| | ||||| ||||||||  ||||||||||||||||| ||||    
T  23524248 aaaggggtgtgtcgcaagtaactttgcaaaacgtggtgtttgggctttgggttgtattgtacctaagtaaatgggccaaaggt 23524330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 19857793 - 19857724
Alignment:
Q  147 gcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggccacaggt 216  Q
    |||| ||| |||||||| ||||||||||||| |||||||||||||| ||||||||||||| |||| ||||    
T  19857793 gcaactaactttgccaaacgtggtgtttgagctttggattgtattgagcctaagtaaatgcgccaaaggt 19857724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 27964968 - 27965029
Alignment:
Q  150 agtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    ||||| ||| |||| ||||||||||| | |||||||  ||||||||||||||||||||||||    
T  27964968 agtaattttaccaaacgtggtgtttgggctttggatgatattgggcctaagtaaatgggcca 27965029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 15318945 - 15318874
Alignment:
Q  138 gggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcc 210  Q
    |||||||| ||||||||  |||| || ||||||||||||| ||||||||||||||||| ||||| ||| ||||    
T  15318945 gggtgtgtcgcaagtaatattgcaaaacgtggtgtttgag-tttggattgtattgggcttaagtcaataggcc 15318874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41037750 - 41037543
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| |||||| ||| ||| | |||| |||  ||     
T  41037750 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgtgaacgtgcagacagatgttatcgttcatttgaacc 41037651  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    ||||||| | ||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||| | |||||||||||||| | |||||    
T  41037650 agtctcgcttgcttcgtgcaccccccttgccggaaagtggtgtgttgcaagtaagtttgccaaccgtagtgtttgggctttggattgtattgagtctaag 41037551  T
Q  201 taaatggg 208  Q
    ||||||||    
T  41037550 taaatggg 41037543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 5931288 - 5931500
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagt 103  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||  || ||||||||||||||||||||||  || |||    
T  5931288 cacacctggttctggcggttatgaaatcgtgggaagtgcaaccgccagagagtttattgcgggaatgtgtagagagacgttgtggttcgtttgaaccagt 5931387  T
Q  104 ctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaa 203  Q
    |||  | ||||||||||||||||||| | | |||||||||||  ||||||| |||||||| || | |||||| | | |||||||||||||||||||||||    
T  5931388 ctctatcgctccgtgcaccccccttgtgtggaaggggtgtgtcacaagtaattttgccaaacgcgatgtttgggttgtggattgtattgggcctaagtaa 5931487  T
Q  204 atgggccacaggt 216  Q
    |||||||| ||||    
T  5931488 atgggccaaaggt 5931500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 28068128 - 28067922
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| ||||| ||||||||||||||| || ||||||  ||     
T  28068128 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgccggagagtttattgcaggaacgtgcagagagacgttgaggctcgtttgaacc 28068029  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgag-atttggattgtattgggcctaa 199  Q
    ||||||| | ||||||||||| |||||||||| ||||| | |||||||||||||||||||||| ||||||| ||| |  ||||||||||||||||| |||    
T  28068028 agtctcgctcgctccgtgcac-ccccttgcggaaaaggag-gtgttgcaagtaagtttgccaaacgtggtgcttgtgcttttggattgtattgggcgtaa 28067931  T
Q  200 gtaaatggg 208  Q
    |||| ||||    
T  28067930 gtaagtggg 28067922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 19330029 - 19329819
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||| |||||||  ||||||||| ||||||  ||     
T  19330029 tggcacaccaagctctggcggttacgaaatcgtgggaagtgtaaccgccagagagattattgcgggaacatgcagagtaacgttgtggctcgtttgaacc 19329930  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     |||| | |  |||||||||||||||| || || ||||| ||| | ||||||||  ||||||| |||||| |||| | |||| |||||||||||||||||    
T  19329929 ggtcttgctttctccgtgcacccccctcgcagggaagggatgtctcgcaagtaatgttgccaaacgtggtatttgggctttgaattgtattgggcctaag 19329830  T
Q  201 taaatgggcca 211  Q
    |||||||||||    
T  19329829 taaatgggcca 19329819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 15620296 - 15620087
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||| |||||| ||||||| |||||| |||||||||||||||||| ||||||  ||     
T  15620296 tggcacacttggctctgacggttacgaaattgtgggaagtgtaaccgccagagagtttattgtgggaacgtgcagagagacgttgtggctcgtttgaacc 15620197  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     |||||| | ||||||| || |||||||||  | |||||||| |||||||||||||||| ||| ||||| |||||   ||||||||||||| ||||| |     
T  15620196 cgtctcgctcgctccgtaca-cccccttgcaaggaaggggtgcgttgcaagtaagtttgtcaaacgtggcgtttggactttggattgtattaggcctgaa 15620098  T
Q  201 taaatgggcca 211  Q
    ||||| |||||    
T  15620097 taaataggcca 15620087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 20899701 - 20899491
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||| | | || |||||||||||||| || | |||||||||| |||||||||  ||     
T  20899701 tggcacacctaactctgacggttacgaaatcgtgggaagtgtaaccgcctgtgagtttattgcgggaacgtggaaagagacgttggggttcgtttgaacc 20899602  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||| || | ||||||||||||||| ||| | ||||||||||| || ||||| ||| |||| ||||||||||| | ||||||| ||| ||||| ||||    
T  20899601 agtctctttcgttccgtgcacccccctcgcgtggaaggggtgtgtcgcgagtaatttttccaaacgtggtgtttgggctttggatggtactgggcttaag 20899502  T
Q  201 taaatgggcca 211  Q
    | |||||||||    
T  20899501 tgaatgggcca 20899491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 8244620 - 8244818
Alignment:
Q  10 tggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgtt 109  Q
    |||||||||||||||||||||||||| |||||||| ||  ||||| ||||||| |||||| |||| ||||||||||||||||||||  || |||||| ||    
T  8244620 tggctctggcggttacgaaatcgtggaaagtgtaatcgctagagagtttattgggggaacgtgcaaagagacgttgtggttcgtttgaaccagtctcttt 8244719  T
Q  110 ggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgaga-tttggattgtattgggcctaagtaaatggg 208  Q
     |||||||||| |||||||||| | |||||||||||||||||||| |  |||||  | ||||||| ||| |||||||||||||  |||||||||||||||    
T  8244720 cgctccgtgca-cccccttgcgtggaaggggtgtgttgcaagtaactcagccaaatgcggtgttt-agactttggattgtattaagcctaagtaaatggg 8244817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 23495443 - 23495649
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||||| | || |||||||||||||| || | |||||||||| |||||||||  ||     
T  23495443 tggcacacctaactctgacggttacgaaatcgtgggaagtgtaaccgtctgtgagtttattgcgggaacgtggaaagagacgttggggttcgtttgaacc 23495542  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     ||||| || | |||||||| |||||||||| | ||||||||||| || ||||| ||||| || ||||||||||| | |||||||  ||||| |||||||    
T  23495543 ggtctctttcgttccgtgca-cccccttgcgtggaaggggtgtgtcgcgagtaattttgcaaaacgtggtgtttgggctttggatgatattgagcctaag 23495641  T
Q  201 taaatggg 208  Q
    ||||||||    
T  23495642 taaatggg 23495649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 42792576 - 42792728
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||| |||||||| ||||||||  ||||||  ||     
T  42792576 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgctagagagtttattgcgggaacgtgcagagatacgttgtgactcgtttgaacc 42792675  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaa 154  Q
     |||||| | |||| ||||||||||||||| | ||||||| |||||||||||||    
T  42792676 ggtctcgcttgctctgtgcaccccccttgcagtaaagggg-gtgttgcaagtaa 42792728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 36712754 - 36712548
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| ||||||||||||||||| ||||||||||  | | || ||||||||| |||| || | |||||||||| |||||||||  |||    
T  36712754 tggcacacctaactctgacggttacgaaatcgtggaaagtgtaaccacctgcgattttattgcgagaacgtggaaagagacgttggggttcgtttgaact 36712655  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||| || | ||||||||| ||||| ||| | ||||||||||| ||  |||| |||||||| ||||||||||  | |||||| |||||||||||||||    
T  36712654 agtctctttcgttccgtgcac-cccctagcgtggaaggggtgtgtcgcgggtaattttgccaaacgtggtgtttaggctttggagtgtattgggcctaag 36712556  T
Q  201 taaatggg 208  Q
    ||||||||    
T  36712555 taaatggg 36712548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 22510097 - 22510286
Alignment:
Q  22 ttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgcac 121  Q
    |||||||||||||||||||||||||| | | || |||||||||||||| || | ||||||||||  ||||||||| || |||||| || | |||||||||    
T  22510097 ttacgaaatcgtgggaagtgtaaccgcctgtgagtttattgcgggaacatggaaagagacgttggagttcgttttaaccagtctctttcgttccgtgcac 22510196  T
Q  122 cccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    || ||| ||| | ||||||||||| ||  |||| |||  ||| ||||||||||||  |||  | ||||||||||||||||||||||||||    
T  22510197 ccacctcgcgtggaaggggtgtgtcgcgggtaattttatcaaacgtggtgtttgaactttatagtgtattgggcctaagtaaatgggcca 22510286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 5590802 - 5590612
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| |||||||||||| |||||||||||||||| | | || |||||||||||||  || | |||||||||| |||||||||  ||     
T  5590802 tggcacaccttactctgacggttacgaaattgtgggaagtgtaaccgcctgcgagtttattgcgggaatgtggaaagagacgttggggttcgtttgaacc 5590703  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtatt 191  Q
    |||||| || | || |||||||| ||| ||| ||||||||| ||| || ||||| |||||||| ||||||||||| | |||||| ||||||    
T  5590702 agtctctttcgttctgtgcaccctcctcgcgtgaaaggggtctgtcgcgagtaattttgccaaacgtggtgtttgggctttggagtgtatt 5590612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 207
Target Start/End: Original strand, 13537860 - 13538030
Alignment:
Q  37 aagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgcaccccccttgcgggaaa 136  Q
    ||||||||||| | | || |||||||||||||| || | |||||||||| ||||| |||  || |||||| || | ||||| ||||||||| ||| | ||    
T  13537860 aagtgtaaccggctgtgagtttattgcgggaacgtggaaagagacgttggggttcatttgaaccagtctctttcgttccgtacacccccctcgcgtggaa 13537959  T
Q  137 ggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgg 207  Q
    ||||||||| || ||||| |||||||| |||| |||||| | ||||||| |||||||||||||||||||||    
T  13537960 ggggtgtgtcgcgagtaattttgccaaacgtgatgtttgggctttggatggtattgggcctaagtaaatgg 13538030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 22922740 - 22922649
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttt 95  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| | ||| | |||||||| ||||||||||||||    
T  22922740 cacacctggctctagcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgctgaaacatacagagagaggttgtggttcgttt 22922649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 24095343 - 24095497
Alignment:
Q  57 ttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagt 156  Q
    ||||||||||||| |||| |||||||||| |||| ||||  ||  |||||| | |||||||||| |||||| ||| | | ||||||||  ||||||||      
T  24095343 ttattgcgggaacgtgcaaagagacgttggggtttgtttgaaccggtctcgcttgctccgtgcatccccctcgcgcggacggggtgtgccgcaagtaacg 24095442  T
Q  157 ttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    ||||||| |||||| |||| | |||||||||||||||||||||||| ||||||||    
T  24095443 ttgccaaacgtggtatttgggctttggattgtattgggcctaagtagatgggcca 24095497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 38608363 - 38608437
Alignment:
Q  2 ggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcaga 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| ||||||    
T  38608363 ggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgccaaagagtttattgcgggaacgtgcaga 38608437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 33622576 - 33622389
Alignment:
Q  20 ggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgc 119  Q
    |||||||||||| ||||||||||||||| | | || |||||||| ||||| |  | |||||||||| |||||||||  || |||||| || | || ||||    
T  33622576 ggttacgaaatcctgggaagtgtaaccgcctgtgagtttattgctggaacgtagaaagagacgttggggttcgtttaaaccagtctctttcgttctgtgc 33622477  T
Q  120 accccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatggg 208  Q
    |||||| |  || | ||||||||||| || ||||| |||||||| | || |||||| | ||||||||||||||||| ||||||||||||    
T  33622476 accccc-tcacgtggaaggggtgtgtcgcgagtaattttgccaaacatgatgtttgggctttggattgtattgggcttaagtaaatggg 33622389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 22922143 - 22922052
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttt 95  Q
    ||||||||||||||| |||||| ||||||||||||||||||||| |||| | |||||| | | ||| | |||||||||||||||||||||||    
T  22922143 cacacctggctctggtggttacaaaatcgtgggaagtgtaaccgccagaaagtttattcctgaaacgtacagagagacgttgtggttcgttt 22922052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 31022356 - 31022305
Alignment:
Q  111 gctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaa 163  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||    
T  31022356 gctccgtgcacccccctcgcggggaaggggtgtgttgcgagtaa-tttgccaa 31022305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 18574122 - 18573916
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| |||||||||||||||||||||||||  ||     
T  18574122 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgtgggaacgtgcagagagacgttgtggttcgtttgaacc 18574023  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    | |||| || ||||| ||||||||||||| | | ||||| ||||| |||||||| |||||||| ||||||||||| | |||| |||||||| ||||||||    
T  18574022 actctcttttgctccatgcaccccccttgtgtggaagggatgtgtcgcaagtaactttgccaaacgtggtgtttgggctttgcattgtattaggcctaag 18573923  T
Q  201 taaatgg 207  Q
    |||||||    
T  18573922 taaatgg 18573916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 211
Target Start/End: Original strand, 7999746 - 7999953
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||   || |||    
T  7999746 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacatgcagagagacgttgtggttcgttggaaccagt 7999845  T
Q  104 ctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaa 203  Q
    |||  | ||||||||||| | ||||| | | ||||||||||| |||||||| |||||||| || |||||| | | | |||||||||||||||||||||||    
T  7999846 ctctgtcgctccgtgcactcgccttgtgtggaaggggtgtgtcgcaagtaattttgccaaacgcggtgttcgggttgtggattgtattgggcctaagtaa 7999945  T
Q  204 atgggcca 211  Q
    ||||||||    
T  7999946 atgggcca 7999953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 24033860 - 24034053
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||| || || |||||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||  ||     
T  24033860 tggcacacttgactttggcggttacgaaatcgtggaaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacattgtggttcgtttgaacc 24033959  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattggg 194  Q
    |||||||||  |||||||||||||||||| ||||||||||||||  |||||||| |||||| | ||||||||||  ||||||||||||||||||    
T  24033960 agtctcgttttctccgtgcaccccccttgtgggaaaggggtgtgacgcaagtaactttgccgaacgtggtgtttaggatttggattgtattggg 24034053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 2085847 - 2085642
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | |||    |||||||||||||| ||||||||||| |||||||||||||  |||    
T  2085847 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaattgccaggtcgtttattgcgggaacatgcagagagacattgtggttcgtttgaact 2085748  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||| || |||||||| |||||||||||  | |||||||||||||||||||| ||| |||| ||||||||||  | |||| |||| ||||||||||||    
T  2085747 agtctctttcgctccgtgtaccccccttgcttggaaggggtgtgttgcaagtaacttttccaaacgtggtgtttaggctttgaattgcattgggcctaag 2085648  T
Q  201 taaatg 206  Q
    ||||||    
T  2085647 taaatg 2085642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 18040586 - 18040378
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||| |||||||||||||||||||||||||  ||     
T  18040586 tggcacacctggctctgacggttacgaaatcgtgggaagtgtaaccgccatagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaacc 18040487  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||| || ||||||||||||| ||||| | | |||||||||||  ||||||| |||||      ||||||||| | |||||||| |||| ||||||||    
T  18040486 agtctctttcgctccgtgcacccaccttgtgtggaaggggtgtgtcacaagtaactttgc------tggtgtttgggctttggattatatt-ggcctaag 18040394  T
Q  201 taaatgggccacaggt 216  Q
    ||||||||||| ||||    
T  18040393 taaatgggccaaaggt 18040378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 32009118 - 32008912
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||  |||||  ||||||||||||| |||||||||||| ||||||||||||  ||     
T  32009118 tggcacacctgactctggcggttacgaaatcgtgggaagtgtaatcgctagagagattattgcgggaacgtgcagagagacgctgtggttcgtttgaacc 32009019  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||| || ||||||||||| ||||||| | | |||||||||||  ||||||| |||| ||| ||||||||||| | ||| ||||||||||||||||||    
T  32009018 agtctctttcgctccgtgcac-ccccttgtgaggaaggggtgtgtcacaagtaactttgtcaaacgtggtgtttgggctttcgattgtattgggcctaag 32008920  T
Q  201 taaatggg 208  Q
    || |||||    
T  32008919 tatatggg 32008912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 33273598 - 33273417
Alignment:
Q  30 tcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgcaccccccttg 129  Q
    |||||||||||||||||| || |||| ||||||||||||| |||||||||||||||||| ||||||  ||  |||| | | |||||  ||||||||||||    
T  33273598 tcgtgggaagtgtaaccgccatagaacttattgcgggaacgtgcagagagacgttgtggctcgtttgaaccggtcttgctcgctcctcgcaccccccttg 33273499  T
Q  130 cgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    ||||| | | ||||||||||||||| |||||||| ||||||||||| | ||||||| ||||| |||||||||||||||||||    
T  33273498 cgggagaagagtgtgttgcaagtaaatttgccaaacgtggtgtttgggctttggatagtattaggcctaagtaaatgggcca 33273417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41280914 - 41280706
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||| ||||||||| |||||||| ||||||  ||     
T  41280914 tggcacacctgactctgggggttacaaaatcgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcagagag-cgttgtggctcgtttgaacc 41280816  T
Q  101 agtctcgttggctccgtgca-ccccccttgcgggaaa-ggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggccta 198  Q
     |||| | | |||||||||| ||||||||| | |||| ||||||||| ||||||||  ||||||| | ||||||||| | |||||||||| |||||||||    
T  41280815 ggtcttgctcgctccgtgcacccccccttgtgcgaaagggggtgtgtcgcaagtaatgttgccaaacatggtgtttgggctttggattgtgttgggccta 41280716  T
Q  199 agtaaatggg 208  Q
    ||||||||||    
T  41280715 agtaaatggg 41280706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 7454771 - 7454547
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| |||| ||||||||||||| |||| |  ||     
T  7454771 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcatagagtttattgtgggaacgtgcatagagacgttgtggctcgtatgaacc 7454672  T
Q  101 agtctcgttggctccgtgca--------------ccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggatt 186  Q
     |||||| | ||||||||||              ||||||  ||||  ||||||||||||||||||||||||||||| ||||| ||||| | ||||||||    
T  7454671 ggtctcgctcgctccgtgcacccccccccccccccccccccggcggagaaggggtgtgttgcaagtaagtttgccaaacgtggagtttgggctttggatt 7454572  T
Q  187 gtattgggcctaagtaaatgggcca 211  Q
    || |||||||||||||||| |||||    
T  7454571 gtgttgggcctaagtaaataggcca 7454547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 24060653 - 24060863
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||| | ||||||  ||||||| ||||| |||||||||| |||||||||||||   ||     
T  24060653 tggcacaccaggctctggcggttacaaaatcgtaggaagtgtaactgccagagagattattgcaggaacatgcagagagatgttgtggttcgttagaacc 24060752  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     |||| | | |||||||||||| |||| ||||| ||||||||||| ||||||||  || || | |||||| |||    ||||||||||||||||||||||    
T  24060753 ggtcttgcttgctccgtgcacctccctcgcggggaaggggtgtgtcgcaagtaatgtttcctaacgtggtatttcgactttggattgtattgggcctaag 24060852  T
Q  201 taaatgggcca 211  Q
    |||||||||||    
T  24060853 taaatgggcca 24060863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 22609594 - 22609393
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagt 103  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||||| |||| ||||||||||  | |||||||||||  || | |    
T  22609594 cacacctggctctggcggttacgaaatcgtgagatgtgtaaccgacagagagtttattgcgtgaacatgcagagagatatcgtggttcgtttgaaccaat 22609495  T
Q  104 ctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaa 203  Q
    |||| | ||||||||||| ||||| || || ||||| |||||||||| |||  ||| ||| | ||||||||| | |||||| ||||||||||||||||||    
T  22609494 ctcgctcgctccgtgcac-cccctcgcagggaagggatgtgttgcaaataatgttgtcaaacatggtgtttgggctttgga-tgtattgggcctaagtaa 22609397  T
Q  204 atgg 207  Q
    ||||    
T  22609396 atgg 22609393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 11709463 - 11709685
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||| ||||||  |||||| |||||| |||||||||||||||||||||||||  ||     
T  11709463 tggcacaccaggctctggcatttacgaaatcgtgggaagtgtaaccgccagagagattattgtgggaacgtgcagagagacgttgtggttcgtttgaacc 11709562  T
Q  101 agtctcgttggctccgtgca------------ccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgt 188  Q
      ||| | |   ||||||||            ||||||| ||||  ||||||||||| ||||||||  ||| ||| |||||| |||| | ||||||||||    
T  11709563 gatcttgcttattccgtgcacccccccccccccccccctcgcggtgaaggggtgtgtcgcaagtaatattgtcaaacgtggtatttgggctttggattgt 11709662  T
Q  189 attgggcctaagtaaatgggcca 211  Q
    |||||||||||||||||||||||    
T  11709663 attgggcctaagtaaatgggcca 11709685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 208
Target Start/End: Complemental strand, 10532790 - 10532638
Alignment:
Q  56 tttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaag 155  Q
    |||||||| ||||| || ||||||||||||||||||||||  || | |||| || ||| |||| |||||||||||  | ||||||||||  |||||||      
T  10532790 tttattgcaggaacgtggagagagacgttgtggttcgtttgaaccaatctctttcgcttcgtgtaccccccttgcatgtaaggggtgtgccgcaagtatc 10532691  T
Q  156 tttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatggg 208  Q
    |||||||| ||||| ||||||| |||| || ||||||||||||||||||||||    
T  10532690 tttgccaaacgtggcgtttgagctttgaatggtattgggcctaagtaaatggg 10532638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 17775785 - 17775924
Alignment:
Q  71 tgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggt 170  Q
    |||||||||||||||||||||| ||  || |||||| || ||||||| ||||||| ||| | | ||||||||||| |||||||| |||||||| |||| |    
T  17775785 tgcagagagacgttgtggttcgattgaaccagtctctttcgctccgtacaccccc-ttgtgtggaaggggtgtgtcgcaagtaactttgccaaacgtgat 17775883  T
Q  171 gtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    ||||| | ||||||||||||||| |||| ||||||||||||    
T  17775884 gtttgggctttggattgtattggacctaggtaaatgggcca 17775924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 10532894 - 10532801
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgtt 94  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |  |||||||| ||||| || |||||||||||||||||||||    
T  10532894 tggcacacctgactctggcggttacgaaatcgtggaaagtgtaaccgccagggtgtttattgcaggaacgtggagagagacgttgtggttcgtt 10532801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 25820811 - 25820905
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttt 95  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||| | | || |||||||| ||||| || | |||||||||| |||||||||    
T  25820811 tggcacaccttactctgacggttacgaaatcgtgggaagtgtaaccgcctgtgagtttattgctggaacgtggaaagagacgttggggttcgttt 25820905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 1038998 - 1038938
Alignment:
Q  88 gttcgttttcactagtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgc 148  Q
    ||||||||  |||||||||  | ||||||||||||||||| ||||| ||||||||||||||    
T  1038998 gttcgtttgaactagtctctgttgctccgtgcacccccctcgcggggaaggggtgtgttgc 1038938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 9859069 - 9859266
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagt 103  Q
    ||||| |||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||| |||||||||||||||||||||||||  || |||    
T  9859069 cacacttggctctgacggttacgaaatcgtgggaagtgtaaccgccaaagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaacgagt 9859168  T
Q  104 ctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagt 201  Q
    |||  | |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||| || ||||||    
T  9859169 ctcactcgctctgtgcaccccccttgcaggaaaggggtgtgttgcaagtaagtttgccaaacgtggtgtttggattttggattgtattaggtctaagt 9859266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 19442212 - 19442001
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagt 103  Q
    |||| ||| |||||||||||||||||||| ||||||| |||||| |||||| ||||||| |||||| || ||||||||||||||||||| ||  || |||    
T  19442212 cacatctgactctggcggttacgaaatcgggggaagtataaccgccagagagtttattgtgggaacgtgtagagagacgttgtggttcgattgaaccagt 19442113  T
Q  104 ctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaa 203  Q
    ||| || ||||||  ||||||| ||| | | ||||||||||| |||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||    
T  19442112 ctctttcgctccgcacaccccc-ttgtgtggaaggggtgtgtcgcaagtaactttgccaaacgtggtgtttgagttttggattgtattgggcctaagtaa 19442014  T
Q  204 atgggccacaggt 216  Q
    |||||||| ||||    
T  19442013 atgggccaaaggt 19442001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 19967520 - 19967318
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagt 103  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||  || |||    
T  19967520 cacacctggctctggcggttacgaaatcgtgggtggtgtaaccgccagagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaaccagt 19967421  T
Q  104 ctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaa 203  Q
    ||| || ||||||||||| ||||||  | | ||||||||||| ||| |||| |||| ||| |||||||||||   ||||||| |||||||||||||||||    
T  19967420 ctctttcgctccgtgcac-ccccttatgtggaaggggtgtgtcgcaggtaactttgtcaaacgtggtgtttggactttggatcgtattgggcctaagtaa 19967322  T
Q  204 atgg 207  Q
    ||||    
T  19967321 atgg 19967318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 38621898 - 38622102
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||  ||||||||| |||||||||||||||| ||||||||| | || | |||||||||||||||| |||||||||||||||||||||||||| ||     
T  38621898 tggcacatttggctctggtggttacgaaatcgtggaaagtgtaactgccaaacaatttattgcgggaacgtgcagagagacgttgtggttcgttttaacc 38621997  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
      ||||| | |||||||| |||||||| ||||| ||||||| ||| ||||||||  | || || |||| |||||||| ||||||||||||||||||||||    
T  38621998 gatctcgctcgctccgtggacccccctcgcggggaaggggtatgtcgcaagtaatgtcgctaaacgtgatgtttgagctttggattgtattgggcctaag 38622097  T
Q  201 taaat 205  Q
    |||||    
T  38622098 taaat 38622102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 8995540 - 8995329
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagt 103  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| || ||| |||||||||||||| ||| |||||||||||||| | | ||  ||  ||    
T  8995540 cacacctagctctagcggttacgaaatcgtgggaagtgtaaccgccatagagtttattgcgggaacgtgctgagagacgttgtggcttgcttgaaccggt 8995441  T
Q  104 ctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaa 203  Q
    |||| | |||||||||| |||||| | ||||||||||| ||| ||||||||  ||| ||| ||||||||||  | ||| ||| |||||||| ||||||||    
T  8995440 ctcgctcgctccgtgca-ccccctcgtgggaaaggggtatgtcgcaagtaatgttgtcaaacgtggtgtttaggctttagatagtattgggtctaagtaa 8995342  T
Q  204 atgggccacaggt 216  Q
    |||||||| ||||    
T  8995341 atgggccaaaggt 8995329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 21815606 - 21815451
Alignment:
Q  56 tttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaag 155  Q
    |||||||||||||| || | |||||||||| |||||||||  || |||||| || | ||||||||||||||| ||| | |||||||||||  | |||||     
T  21815606 tttattgcgggaacgtggaaagagacgttggggttcgtttgaaccagtctctttcgttccgtgcacccccctcgcgtggaaggggtgtgtcacgagtaat 21815507  T
Q  156 tttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    |||||||| ||||||||||| ||||||||| ||| ||||||||||| |||||||||    
T  21815506 tttgccaaacgtggtgtttgggatttggatggtactgggcctaagtgaatgggcca 21815451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 8990866 - 8990779
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtgg 88  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||| | |||| ||||||||||||||||||    
T  8990866 tggcacacctggctctagcggttacgaaatcgtgggaagtgtaactgtcagagagtttattgtgagaacgtgcagagagacgttgtgg 8990779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 24973991 - 24973786
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||| | | || ||||||| |||||  |  | |||||||||| |||||||||  ||     
T  24973991 tggcacacctaactctgacggttacgaaatcgtgggaagtgtaaccgcctgtgagtttattgtgggaatgttgaaagagacgttgaggttcgtttgaacc 24973892  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     ||||| || | || |||||||||| ||||  | ||||| ||||| |||||||| ||||| || ||||||||||| | |||||||  |||||||||||||    
T  24973891 ggtctctttcgttctgtgcaccccc-ttgcttggaagggatgtgtcgcaagtaattttgcaaaacgtggtgtttgggctttggatgatattgggcctaag 24973793  T
Q  201 taaatgg 207  Q
    |||||||    
T  24973792 taaatgg 24973786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 21817843 - 21817627
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||| | | | || |||||||||||||| || | ||||||| || |||||||||  ||     
T  21817843 tggcacacctaactctgacggttacgaaatcgtgggaagtgtaacagcctgtgagtttattgcgggaacgtggaaagagacgctggggttcgtttgaacc 21817744  T
Q  101 agtctcgttggctccgtgca------ccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattggg 194  Q
      |||| || | ||||||||      |||||||  || | ||||||||||| || ||||| |||||||| ||||||||||| | ||||||| ||| ||||    
T  21817743 gatctctttcgttccgtgcacccccccccccctcacgtggaaggggtgtgtcgcgagtaattttgccaaacgtggtgtttgggctttggatagtactggg 21817644  T
Q  195 cctaagtaaatgggcca 211  Q
    ||||||| |||||||||    
T  21817643 cctaagtgaatgggcca 21817627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 33028926 - 33029090
Alignment:
Q  39 gtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttca-ctagtctcgttggctccgtgcaccccccttgcgggaaag 137  Q
    |||||||||| |||||  |||||||| |||| | || ||||||||||||||| ||||| | |  ||| || | ||||||| ||||||| |  |||| |||    
T  33028926 gtgtaaccgttagagagattattgcgagaacgtacatagagacgttgtggtttgttttgaaccggtcccgcttgctccgttcaccccc-tcacggggaag 33029024  T
Q  138 gggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaa 203  Q
    |||||||| ||||||||  | | ||| ||||||||||| | |||||||| ||||| ||||||||||    
T  33029025 gggtgtgtcgcaagtaatatagtcaaacgtggtgtttgggctttggattatattgtgcctaagtaa 33029090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 49472353 - 49472504
Alignment:
Q  56 tttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaag 155  Q
    |||||||||||||| || | |||||||||| ||||| |||  ||  ||||| || | ||||||||||||| | ||| |  |||||||| | || |||||     
T  49472353 tttattgcgggaacgtggaaagagacgttggggttcatttgaaccggtctctttcgttccgtgcaccccc-tcgcgtgggaggggtgtttcgcgagtaat 49472451  T
Q  156 tttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatggg 208  Q
    |||| ||| || ||||||||   ||||||| ||||||||||||||||||||||    
T  49472452 tttgtcaaacgcggtgtttggactttggatggtattgggcctaagtaaatggg 49472504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 18732557 - 18732608
Alignment:
Q  111 gctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaa 163  Q
    |||||| |||||||||||| ||  |||||||||||||||||||| ||||||||    
T  18732557 gctccgagcaccccccttgtggagaaggggtgtgttgcaagtaa-tttgccaa 18732608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 30158 - 29947
Alignment:
Q  5 acacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtc 104  Q
    |||||||||||||| ||||||||||| |||||||||||||||  |||||| |||||||||||||| || ||||||||||||||||||||||  || ||||    
T  30158 acacctggctctggtggttacgaaattgtgggaagtgtaacctccagagattttattgcgggaacgtgtagagagacgttgtggttcgtttgaaccagtc 30059  T
Q  105 tcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaa 204  Q
    || || |||||||||||| |||||||  | ||||||||||||||| |||| |||||||| |||| |||||| | |||||||||| |||||||||| ||||    
T  30058 tctttcgctccgtgcacctcccttgcatggaaggggtgtgttgcatgtaactttgccaaacgtgctgtttgggctttggattgtgttgggcctaattaaa 29959  T
Q  205 tgggccacaggt 216  Q
    ||||||| ||||    
T  29958 tgggccaaaggt 29947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 253408 - 253626
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||| |||||||||| |||  ||     
T  253408 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaactgccagagagtttattgcgggaacgtgcagagagatgttgtggttcatttgaacc 253507  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     |||| |    |||||||||| |||||  |||| ||||||||||| ||| ||||  ||||||| ||||||||||| ||||||||||||||||||||||||    
T  253508 ggtcttgcactctccgtgcactcccctctcggggaaggggtgtgtcgcacgtaatgttgccaaacgtggtgtttgggatttggattgtattgggcctaag 253607  T
Q  201 taaatgggccacaggttct 219  Q
     |||||||||| |||||||    
T  253608 aaaatgggccaaaggttct 253626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 242768 - 242975
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||| ||||||||| |||||||||||||||||| | || ||| |||||||||||||| |||| ||||||||||||||||||||  ||     
T  242768 tggcacacctggctcttgcggttacgtaatcgtgggaagtgtaactgccaaagagtttattgcgggaacgtgcaaagagacgttgtggttcgtttgaacc 242867  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     |||| | | ||||||||||||| |||  |||| ||||||||||| ||||||||  ||||||| | ||||||||| | ||| ||||||||||||||||||    
T  242868 ggtcttgctcgctccgtgcacccgcctatcggggaaggggtgtgtcgcaagtaatgttgccaaacttggtgtttgggctttagattgtattgggcctaag 242967  T
Q  201 taaatggg 208  Q
    ||||||||    
T  242968 taaatggg 242975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 19790370 - 19790580
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||  ||     
T  19790370 tggcacacctgactctgacggttacgaaatcgtgggaagtgtaaccgtcagagagtttattgtgggaacgtgcagagagacgttgtggttcgtttgaacc 19790469  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||| || |||| ||||||||||||||   | |||||| |||| |||||||| ||| |||| |  |||||||| | ||||||| ||||||||||||||    
T  19790470 agtctctttcgctctgtgcaccccccttgtctggaaggggcgtgtcgcaagtaactttaccaaacacggtgtttgggttttggatggtattgggcctaag 19790569  T
Q  201 taaatgggcca 211  Q
    |||||||||||    
T  19790570 taaatgggcca 19790580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 22915151 - 22915355
Alignment:
Q  5 acacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtc 104  Q
    |||| |||||| |||||||| |||||||||||||||||||| |  ||||| |||||||||||||| || |||||||||||||| |||||||  |||||||    
T  22915151 acacttggctccggcggttatgaaatcgtgggaagtgtaacagctagagagtttattgcgggaacgtgaagagagacgttgtgattcgtttgaactagtc 22915250  T
Q  105 tcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaa 204  Q
    ||| | ||||||||||  ||||||||||||| ||||||||||||||||||  ||| ||| ||||||||||| | ||  ||||||||||||||||||||||    
T  22915251 tcgctcgctccgtgca--ccccttgcgggaagggggtgtgttgcaagtaaacttgtcaaacgtggtgtttgcgcttcagattgtattgggcctaagtaaa 22915348  T
Q  205 tgggcca 211  Q
    || ||||    
T  22915349 tgagcca 22915355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 16853113 - 16852911
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| |||||||||||||||||| | ||||  ||     
T  16853113 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagtttattgcggtaacgtgcagagagacgttgtggcttgtttgaacc 16853014  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     || ||  | |||||||| ||| |||| || |  | | |||| || |||||| |  || |||| |||||  |||||| ||||||||||||||||||||||    
T  16853013 ggtgtcactcgctccgtgtacctccctcgcagagaggtggtgcgtcgcaagtgatgttaccaaacgtggaatttgagctttggattgtattgggcctaag 16852914  T
Q  201 taa 203  Q
    |||    
T  16852913 taa 16852911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 16914814 - 16915008
Alignment:
Q  14 tctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggct 113  Q
    |||||||||||||||||||||||| ||||||||   |||||| | ||||||||||| |||| |||||||||| || ||||||  ||  |||    | |||    
T  16914814 tctggcggttacgaaatcgtgggaggtgtaaccagtagagaaataattgcgggaacgtgcaaagagacgttgcggctcgtttgaaccggtccttcttgct 16914913  T
Q  114 ccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatggg 208  Q
    |||| |||||||||  |||  | ||||| ||| |||||||||||| |||| ||||||||||| |  | |||||||||||||||||||||||||||    
T  16914914 ccgttcacccccctcacggagagggggtatgtcgcaagtaagttttccaaacgtggtgtttgggtatgggattgtattgggcctaagtaaatggg 16915008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 44635860 - 44636052
Alignment:
Q  19 cggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtg 118  Q
    ||||||||||||||||||||||||||||| ||||||     | |||||||| |||  ||||||||||| ||||||||  |||||||||| | |||||||     
T  44635860 cggttacgaaatcgtgggaagtgtaaccgccagagagagattcgcgggaacgtgcgaagagacgttgtagttcgtttgaactagtctcgcttgctccgta 44635959  T
Q  119 caccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttgga-ttgtattgggcctaagtaaatgggcc 210  Q
    || |||| | ||||| ||| |||||||||| |||||  ||| ||| | |||| |||||  ||| || |||||||| |||||||||||||||||    
T  44635960 catccccttcgcggggaagcggtgtgttgcgagtaatgttgtcaaacatggtatttgacctttcgatttgtattgagcctaagtaaatgggcc 44636052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 1141 - 930
Alignment:
Q  5 acacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtc 104  Q
    |||||||||||| ||| |||||||||||||||||||||||||| || ||| |||||||| ||||| |||||||| ||||||||||||||||  || ||||    
T  1141 acacctggctctagcgattacgaaatcgtgggaagtgtaaccgccatagagtttattgcaggaacatgcagagaaacgttgtggttcgtttgaaccagtc 1042  T
Q  105 tcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaa 204  Q
    ||| | ||||||||||||||| | | ||  ||||||| || ||||||||||||||| || ||||||||||| | ||||||||||||||| ||||||||||    
T  1041 tcgctcgctccgtgcacccccttcgtggagaaggggtatgctgcaagtaagtttgctaaacgtggtgtttgggctttggattgtattggacctaagtaaa 942  T
Q  205 tgggccacaggt 216  Q
    ||||||| ||||    
T  941 tgggccaaaggt 930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 16416 - 16206
Alignment:
Q  5 acacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtc 104  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |||||| |||||||||||||| |||||||||| ||||||||||||||  || ||||    
T  16416 acacctggctctggcggttacaaaatcgtgggaagtgtaaccaccagagagtttattgcgggaacgtgcagagagatgttgtggttcgtttgaaccagtc 16317  T
Q  105 tcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaa 204  Q
    || || ||||||||||| ||||||| ||||||||||||||| ||| |||| ||| |||| | | ||||||| | ||||| ||||||||||||||||||||    
T  16316 tcattcgctccgtgcac-ccccttgtgggaaaggggtgtgtcgcatgtaacttttccaaacatagtgtttgggctttgggttgtattgggcctaagtaaa 16218  T
Q  205 tgggccacaggt 216  Q
    ||| ||| ||||    
T  16217 tggaccaaaggt 16206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 151389 - 151186
Alignment:
Q  7 acctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctc 106  Q
    |||||||||| |||||||||||||||||||||||| ||| | |||||| |||||||| ||||| | |||||||||||||||||||||||  |   |||||    
T  151389 acctggctctagcggttacgaaatcgtgggaagtgaaac-gccagagagtttattgcaggaacgtacagagagacgttgtggttcgtttgaatcggtctc 151291  T
Q  107 gttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatg 206  Q
    | | ||||||||||||||| ||| ||| ||||||| || |||||||||||||||||| ||| ||||||| | ||||||||||||| ||||||||||||||    
T  151290 gctcgctccgtgcaccccctttgtggggaaggggtatgctgcaagtaagtttgccaaacgtagtgtttgggctttggattgtattaggcctaagtaaatg 151191  T
Q  207 ggcca 211  Q
    |||||    
T  151190 ggcca 151186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 211
Target Start/End: Original strand, 68771 - 68978
Alignment:
Q  4 cacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagt 103  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||  ||||| |||||||||||||| ||   ||||||||||||| ||||||  ||||||    
T  68771 cacaccttgctttggcggttacgaaatcgtgggaagtgtaaccgctagagagtttattgcgggaacgtgggaagagacgttgtggctcgtttgaactagt 68870  T
Q  104 ctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaa 203  Q
    |||| | ||||||||||||||||| || |  ||||||||||| ||||||||  |||| || ||||| || || | |||| ||||||||||||||||||||    
T  68871 ctcggttgctccgtgcacccccctcgcagagaaggggtgtgtcgcaagtaatgttgcaaaacgtggagtctgggctttgaattgtattgggcctaagtaa 68970  T
Q  204 atgggcca 211  Q
    ||||||||    
T  68971 atgggcca 68978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 74940 - 75057
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||| |||||| |||||||||||||| ||| |||| ||||||||| ||||||  ||     
T  74940 tggcacacctggctctggcagttatgaaatcgtcggaagtgtaaccgccagagagtttattgcgggaacgtgcggagacacgttgtggctcgtttgaacc 75039  T
Q  101 agtctcgttggctccgtg 118  Q
    ||||||| | ||||||||    
T  75040 agtctcggttgctccgtg 75057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 4301 - 4091
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| |  ||||| ||||||||| |||| |||||| ||||||||||||||||||  ||     
T  4301 tggcacacctggctctggtggttacgaaatcgtgggatgtgtaactgcgagagagtttattgcgagaacgtgcagatagacgttgtggttcgtttgaacc 4202  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     ||| || | |||||||| |||||| | | ||  ||||||| || |||||||||||||||||| |||||||||||   ||||||||||||| | ||||||    
T  4201 ggtcccgctcgctccgtgaacccccttcgtggagaaggggtatgctgcaagtaagtttgccaaacgtggtgtttggactttggattgtatttgacctaag 4102  T
Q  201 taaatgggcca 211  Q
    |||||| ||||    
T  4101 taaatgagcca 4091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 47520 - 47386
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||  ||     
T  47520 tggcacacttggctctggcggttacaaaattgtgggaagtgtaaccgccagagagtttattgcgggaacgtgcagagagacgttgtggttcgtttgaacc 47421  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaa 135  Q
    |||||| || ||||||||||||||||||| |||||    
T  47420 agtctctttcgctccgtgcaccccccttgtgggaa 47386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 56329 - 56248
Alignment:
Q  135 aaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggccacaggt 216  Q
    ||||||||||| |||||||| || ||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  56329 aaggggtgtgtcgcaagtaacttcgccaaacgtggtgtttgggctttggattgtattgggcctaagtaaatgggccaaaggt 56248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 9243 - 9435
Alignment:
Q  15 ctggcggttacgaaatcgtgggaagtgtaa-ccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggct 113  Q
    |||||||||||||||| ||||||||||||| |||  ||||| |||||||| ||||| |||||||||||||||||||||||||  || ||||||    |||    
T  9243 ctggcggttacgaaattgtgggaagtgtaaaccgctagagagtttattgcaggaacgtgcagagagacgttgtggttcgtttgaaccagtctc----gct 9338  T
Q  114 ccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    ||||||| ||  || ||||||||||||||||| |||||||| |||||||| ||||||||||| | |||| || ||||||| || ||||||||||||||    
T  9339 ccgtgca-cctgctcgcgggaaaggggtgtgtcgcaagtaattttgccaaacgtggtgtttgggctttgaatagtattggacccaagtaaatgggcca 9435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 1626 - 1444
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||||||||||||| || ||||  |||||||| |||||||||||| |||||| |||||||||||||| || ||||||| ||||||||||||||  ||     
T  1626 tggcacacctggctctagcagttataaaatcgtgagaagtgtaaccgccagagagtttattgcgggaacgtgtagagagatgttgtggttcgtttgaacc 1527  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggat 185  Q
    |||||| || ||||||||||  ||||||| ||| ||||| ||||| |||||||| || ||||| ||||||||||| | |||||||    
T  1526 agtctctttcgctccgtgca--ccccttgtggggaagggatgtgtcgcaagtaacttcgccaaacgtggtgtttgggctttggat 1444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 1703 - 1861
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagaga-atttattgcgggaacctgcagagagacgttgtggttcgttttcac 99  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||||||||||||||  ||    
T  1703 tggcatacttggctctggcggttacgaaatcgtgggaagtgtaaccgccagagagttttattgcgggaacgtgcagagagacgttgtggttcgtttgaac 1802  T
Q  100 tagtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttg 159  Q
     | |||| || |||||| ||| |||||||| | | ||||||| |||||||||||| ||||    
T  1803 caatctctttcgctccgggca-cccccttgtgtggaaggggtatgttgcaagtaactttg 1861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 15528 - 15603
Alignment:
Q  135 aaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcc 210  Q
    ||||||| |||||||||||| |||||||| || | |||||||| || | |||||||||||| ||||||||||||||    
T  15528 aaggggtatgttgcaagtaactttgccaaacgcgttgtttgagcttggtattgtattgggcataagtaaatgggcc 15603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 15467 - 15513
Alignment:
Q  8 cctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagaga 54  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||||    
T  15467 cctgactctggcggttactaaatcgtgggaagtgtaaccgccagaga 15513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 37330 - 37124
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    |||||| || |||||||||||||| |||||||||||||||||||||| ||||||  ||||||| ||||| ||||||||||||||| |||| ||||  |      
T  37330 tggcacgccaggctctggcggttatgaaatcgtgggaagtgtaaccg-cagagagattattgcaggaacatgcagagagacgttgcggtttgtttgaatc 37232  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     |||| | | |||| |||||||||  | ||||  ||||||||||| ||||||||   |||||| |||||| ||| ||||||||||||||||| |||||||    
T  37231 ggtcttgcttgctctgtgcacccctgtcgcggagaaggggtgtgtcgcaagtaacactgccaaacgtggtattttagatttggattgtattgagcctaag 37132  T
Q  201 taaatggg 208  Q
    ||||||||    
T  37131 taaatggg 37124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 2935 - 2723
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||  |||||  ||||| | ||||| ||||||||||| ||||| |||||||  ||     
T  2935 tggcacaccaggctctggcggttacgaaatcgtgggaagtgtaaccgctagagagattattactggaacgtgcagagagacattgtgtttcgtttgaacc 2836  T
Q  101 agtctcgttggctccgtgcacccccc--ttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggccta 198  Q
     |||| ||| ||||||||||||||||  | || |  ||||| ||||| ||||||||  |||||||   ||||||||| | |||| |||||||| ||||||    
T  2835 ggtcttgttcgctccgtgcacccccccctcgcagagaagggttgtgtagcaagtaatgttgccaaagatggtgtttgggctttgaattgtattaggccta 2736  T
Q  199 agtaaatgggcca 211  Q
     ||||||||||||    
T  2735 tgtaaatgggcca 2723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 10977 - 10767
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| ||||||||||||| ||||||||||||||| | | || |||||||||||||| || | |||||||||| | ||| |||  ||     
T  10977 tggcacacctaactctgacggttacgaaatcatgggaagtgtaaccgcctgtgagtttattgcgggaacatggaaagagacgttgggtttcttttgaacc 10878  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     ||||| || | ||| ||||| ||||| ||  | ||||||||||| || ||||| |||||||| ||||||||||| | ||||||| ||||||||||||||    
T  10877 ggtctctttcgttccttgcactcccctcgcatggaaggggtgtgtcgcgagtaattttgccaaacgtggtgtttgggctttggatggtattgggcctaag 10778  T
Q  201 taaatgggcca 211  Q
    | |||||||||    
T  10777 tgaatgggcca 10767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 17203 - 17358
Alignment:
Q  56 tttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaag 155  Q
    |||||||||||||| || | |||||||||| |||||||||  || |||||| || | ||||||||||||||| ||| | |||||||||||  | |||||     
T  17203 tttattgcgggaacgtggaaagagacgttggggttcgtttgaaccagtctctttcgttccgtgcacccccctcgcgtggaaggggtgtgtcacgagtaat 17302  T
Q  156 tttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    |||||||| ||||||||||| ||||||||| ||| ||||||||||| |||||||||    
T  17303 tttgccaaacgtggtgtttgggatttggatggtactgggcctaagtgaatgggcca 17358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 14966 - 15182
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||| | | | || |||||||||||||| || | ||||||| || |||||||||  ||     
T  14966 tggcacacctaactctgacggttacgaaatcgtgggaagtgtaacagcctgtgagtttattgcgggaacgtggaaagagacgctggggttcgtttgaacc 15065  T
Q  101 agtctcgttggctccgtgca------ccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattggg 194  Q
      |||| || | ||||||||      |||||||  || | ||||||||||| || ||||| |||||||| ||||||||||| | ||||||| ||| ||||    
T  15066 gatctctttcgttccgtgcacccccccccccctcacgtggaaggggtgtgtcgcgagtaattttgccaaacgtggtgtttgggctttggatagtactggg 15165  T
Q  195 cctaagtaaatgggcca 211  Q
    ||||||| |||||||||    
T  15166 cctaagtgaatgggcca 15182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 12418 - 12625
Alignment:
Q  1 tggcacacctggctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcact 100  Q
    ||||||||| ||||||||||||||| ||||| |||||||||||||||  |||||  ||||||||||||| |||| |||  |||||||| || |||  ||     
T  12418 tggcacaccaggctctggcggttacaaaatcatgggaagtgtaaccgctagagagattattgcgggaacgtgcacaga--cgttgtggctcatttaaacc 12515  T
Q  101 agtctcgttggctccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
     |||| ||| |||| ||||| |||| | ||||  || |||||||| ||||||||  |||| || ||||||||||| | |||| |||||||| ||||||||    
T  12516 ggtcttgttcgctctgtgcatcccc-tcgcggagaatgggtgtgtcgcaagtaatgttgcaaaacgtggtgtttgggctttgaattgtattaggcctaag 12614  T
Q  201 taaatgggcca 211  Q
    |||||||||||    
T  12615 taaatgggcca 12625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 54696 - 54499
Alignment:
Q  13 ctctggcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggc 112  Q
    ||||| ||||||||||||| ||||||||||||||  | | || |||||||||||||| || |||||||||||| | |||||||  || |||||| || |     
T  54696 ctctgacggttacgaaatcatgggaagtgtaaccacctgtgagtttattgcgggaacgtggagagagacgttgggtttcgtttgaaccagtctccttcgt 54597  T
Q  113 tccgtgcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    ||||||| ||||||| ||| |  ||||||||||  | ||||| |||||||| |||||  |||| | |||| | ||||||||| ||||||||||||||||    
T  54596 tccgtgcgcccccctcgcgtg-gaggggtgtgtctcgagtaattttgccaaacgtggattttgggctttgtagtgtattgggtctaagtaaatgggcca 54499  T

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Target: scaffold0362 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 7435 - 7244
Alignment:
Q  21 gttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtgca 120  Q
    ||||||||||||| ||||||||||| | | | || |||||||||||||| || | |||||||||| |||||||||  || |||||| || | ||||||||    
T  7435 gttacgaaatcgttggaagtgtaactgcctgtgagtttattgcgggaacgtggaaagagacgttggggttcgtttgaaccagtctctttcgttccgtgca 7336  T
Q  121 cccccctt-gcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    |||||| | | | | | ||||||||| || ||||| |||||||| | ||||||||| | |||||||  |||||| | ||| |||||||||||    
T  7335 ccccccctcgtgtggagggggtgtgtcgcgagtaattttgccaaacttggtgtttgggctttggatgatattggacataaataaatgggcca 7244  T

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Target: scaffold1272 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold1272
Description:

Target: scaffold1272; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 1969 - 2048
Alignment:
Q  132 ggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcca 211  Q
    |||||||||||||| |||||||| |||||||| ||||||||||| | |||| || ||||||| || ||||||||||||||    
T  1969 ggaaaggggtgtgtcgcaagtaattttgccaaacgtggtgtttgggctttgaatagtattggacccaagtaaatgggcca 2048  T

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Target: scaffold0063 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 36866 - 36678
Alignment:
Q  19 cggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgtg 118  Q
    |||||||||||| |||||||||||||||  || |||     |||||||||| |||  ||||||||||  ||||||||  |||  ||||| | |||| |||    
T  36866 cggttacgaaattgtgggaagtgtaacctccaaagagagatttgcgggaacttgcgaagagacgttgcagttcgtttgaactgttctcgcttgctctgtg 36767  T
Q  119 caccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatggg 208  Q
    || | |  | ||||| |||||||||||||| |||||  ||||||| |||||| |||| |  |||||||||||||| |||||| |||||||    
T  36766 catctcgttcgcggggaaggggtgtgttgcgagtaatgttgccaaacgtggtatttg-ggcttggattgtattggacctaagaaaatggg 36678  T

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Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 49222 - 49133
Alignment:
Q  111 gctccgtgcacccccctt-gcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaag 200  Q
    |||||||||||||||||| ||||| |||||||||||||  |||||  ||||||| |||||| |||  |  || ||||||||||||||||||    
T  49222 gctccgtgcaccccccttcgcggggaaggggtgtgttgtgagtaatgttgccaaacgtggtattt-tggcttcgattgtattgggcctaag 49133  T

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Target: scaffold0233 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 16082 - 16052
Alignment:
Q  17 ggcggttacgaaatcgtgggaagtgtaaccg 47  Q
    |||||||||||||||||||||||||||||||    
T  16082 ggcggttacgaaatcgtgggaagtgtaaccg 16052  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 20372 - 20181
Alignment:
Q  18 gcggttacgaaatcgtgggaagtgtaaccgtcagagaatttattgcgggaacctgcagagagacgttgtggttcgttttcactagtctcgttggctccgt 117  Q
    |||||||| |||| ||||||||||||||||  |||||| | |||| |||| | ||  ||||||| || ||  ||||||  ||| |||||| | |||| |     
T  20372 gcggttacaaaattgtgggaagtgtaaccgctagagaaataattgtgggagcatgttgagagacattatgactcgtttaaactggtctcgcttgctctgc 20273  T
Q  118 gcaccccccttgcgggaaaggggtgtgttgcaagtaagtttgccaaccgtggtgtttgagatttggattgtattgggcctaagtaaatgggcc 210  Q
    |||||||| | |||   |||||||||||  |||||||  || |||| |||||| |||| | ||||||||||||||  |||  |||||||||||    
T  20272 gcacccccttcgcgatgaaggggtgtgtcacaagtaatatttccaaacgtggtatttg-ggtttggattgtattgctcctcggtaaatgggcc 20181  T

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