View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12275_low_13 (Length: 221)
Name: NF12275_low_13
Description: NF12275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12275_low_13 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 38687931 - 38687725
Alignment:
| Q |
15 |
aattaatcaatattgatctgttgttcgttttccttctctccgaaagctacaaaaatggtggttatgagggatgtgcttaatcaacattctcatgaacaat |
114 |
Q |
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| T |
38687931 |
aattaatcaatattgatctgttgttcgttttccttctctccgaaagctacaaaaatggtggttatgaaggatgtgcttaatcaacattctcatgaacaat |
38687832 |
T |
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| Q |
115 |
agtagtataggttaagcttttttccctttactgagattatcaaagatgaattt-agaaaacaatcaccttaaacaacatacttcaaatggattagaaagg |
213 |
Q |
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| T |
38687831 |
agtagtataggttaagctttttt-cctttactgagattaacaacgatgaatttcaaaaaacaatcaccttaaacaacatacttcaaatggattaaaaagg |
38687733 |
T |
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| Q |
214 |
ggaggtac |
221 |
Q |
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|||||||| |
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| T |
38687732 |
ggaggtac |
38687725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 40648336 - 40648465
Alignment:
| Q |
24 |
atattgatctgttgttcgttttccttctctccgaaagctacaaaaatggtggttatgagggatgtgcttaatcaacattctcatgaacaatagtagtata |
123 |
Q |
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|||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||| ||| |
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| T |
40648336 |
atattgatatgttgttcgttttccttctctctaaaaggtacaaaaatggtggttatgaagaatgtgcttgatcaccattctcatgaacaatagtagcata |
40648435 |
T |
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| Q |
124 |
ggtt-aagc---ttttttccctttactgag |
149 |
Q |
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| T |
40648436 |
ggttaaagctttttttttccctttactgag |
40648465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 22648988 - 22648782
Alignment:
| Q |
15 |
aattaatcaatattgatctgttgttcgttttccttctctccgaaagctacaaaaatggtggttatgagggatgtgcttaatcaacattctcatgaacaat |
114 |
Q |
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| T |
22648988 |
aattaatcaatattgatctgttgttcgttttccttctctccgaaagctacaaaaatggtggttatgaaggatgtgcttaatcaacattctcatgaacaat |
22648889 |
T |
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| Q |
115 |
agtagtataggttaagcttttttccctttactgagattatcaaagatgaattt-agaaaacaatcaccttaaacaacatacttcaaatggattagaaagg |
213 |
Q |
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| T |
22648888 |
agtagtataggttaaactttttt-cctttactgagattaacaacgatgaatttcaaaaaacaatcaccttaaacaacatacttcaaatggattaaaaagg |
22648790 |
T |
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| Q |
214 |
ggaggtac |
221 |
Q |
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| T |
22648789 |
ggaggtac |
22648782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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