View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12275_low_3 (Length: 413)
Name: NF12275_low_3
Description: NF12275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12275_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 413
Target Start/End: Complemental strand, 44245753 - 44245349
Alignment:
| Q |
10 |
acctgtggcccctgttaagccaaaggaagaagagttgaagaaagaaggttccgcataagata-catcaggattttgtccctgtatcttatgagtatagag |
108 |
Q |
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| T |
44245753 |
acctgtggcccctgttaagccaaaggaagaagagttgaagaaagaaggttccgcataagataacatcaggattttgtccctgtatcttatgagtatagag |
44245654 |
T |
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| Q |
109 |
gtgattcggaacttagatatttgtcatggaacatatgagtgcactctcttttgtagctaaagtttgtctctgttnnnnnnnttacagtactgctgactaa |
208 |
Q |
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| T |
44245653 |
gtgattcggaacttagatatttgtcatggaacatatgagtgcactctcttttgtagctaaagtttgtctctgttaaaaaaattacagtactgctgattaa |
44245554 |
T |
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| Q |
209 |
tttttcctttttccaattcgagatgatccagacttgttaccattggtggaggaaaacttctattatattgattactttgttctccttctgcctgttttat |
308 |
Q |
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| T |
44245553 |
tttttcctttttccaattcgagatgatctagacttgttactattggtggaggaaaacttctattatattgattactttgttctccttctgcctgttttat |
44245454 |
T |
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| Q |
309 |
ttgcatgctctggttgtttattaattcgtttttagattgcacaaacagggcaattcgtgtccctagatccaaggcccctgttatgtgaactgtattttaa |
408 |
Q |
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| T |
44245453 |
ttgcatgctctggttgtttattaattcgtttttagattgcacaaacagggcaattcgtgtccctagatccaaggcccctgttatgtgaactgtattttaa |
44245354 |
T |
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| Q |
409 |
atatt |
413 |
Q |
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| T |
44245353 |
atatt |
44245349 |
T |
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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 7081918 - 7081839
Alignment:
| Q |
99 |
gagtatagaggtgattcggaacttagatatttgtcatggaacatatgagtgcact--ctcttttgtagctaaagtttgtc |
176 |
Q |
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| T |
7081918 |
gagtctagaagtgattcagaactcagatatctgtcatggaacatatgagtgcactctctcttttgtagctaaagtttgtc |
7081839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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