View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12275_low_5 (Length: 333)
Name: NF12275_low_5
Description: NF12275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12275_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 14596886 - 14597047
Alignment:
| Q |
1 |
taattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgt |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
14596886 |
taattggtgcagatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacatcctctgt |
14596985 |
T |
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| Q |
101 |
cactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
162 |
Q |
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| T |
14596986 |
cactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
14597047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 14611684 - 14611523
Alignment:
| Q |
1 |
taattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgt |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||| |
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| T |
14611684 |
taattggtgctgatccgcgaaatgcatctcgcttggtcacgcaatatacagaacgccatccacggttgtgcatgcggtaacctgtaacgacgtcctctgt |
14611585 |
T |
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| Q |
101 |
cactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
162 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |
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| T |
14611584 |
cactgatccataaatccatcccactctgtctccccattctgtcttctcttcgtacctacatg |
14611523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 213 - 327
Target Start/End: Original strand, 14597098 - 14597212
Alignment:
| Q |
213 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
312 |
Q |
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| T |
14597098 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
14597197 |
T |
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| Q |
313 |
gacacaggttctgct |
327 |
Q |
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||||||| ||||||| |
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| T |
14597198 |
gacacagattctgct |
14597212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 12192718 - 12192859
Alignment:
| Q |
15 |
ccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaa |
114 |
Q |
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||||| || ||||| | |||||| |||||||| ||||| | |||||| | ||||||||| | || ||||| || || || || || || ||||| |||| |
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| T |
12192718 |
ccacggaaggcatccctcttggtcacacaatacacagacctccatcctctattgtgcattctataacctgtcacaacatcctcggttaccgacccgtaaa |
12192817 |
T |
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| Q |
115 |
tccatcccactctttctccccattctgtcttgtcttcatacc |
156 |
Q |
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||||||| ||||| ||||||||||| ||||| |||||||||| |
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| T |
12192818 |
tccatccaactctatctccccattcggtcttatcttcatacc |
12192859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 15417158 - 15417259
Alignment:
| Q |
56 |
ccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatac |
155 |
Q |
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||||||||| |||||||| | ||| || || || || |||||||||||||| ||||||||||| || | ||| |||||||||||||| || || |||||| |
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| T |
15417158 |
ccatccacggttgtgcattctgtaaccagttacaacatcttctgtcactgatccataaatccaacctattctatctccccattctgttttatcctcatac |
15417257 |
T |
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| Q |
156 |
ct |
157 |
Q |
| |
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|| |
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| T |
15417258 |
ct |
15417259 |
T |
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