View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12275_low_8 (Length: 260)
Name: NF12275_low_8
Description: NF12275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12275_low_8 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 6996488 - 6996249
Alignment:
| Q |
19 |
caattgccataaaaaatcagctagccttaatgtctgtcatcaagaaagctagaagaaaaacgattctcgctcttcaaaagtggacaattcactttagagt |
118 |
Q |
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| T |
6996488 |
caattgccataaaaaatcagctagccttaatgtctgtcatcaagaaagctagaagaaaaacgattctcgctcttcaaaagtggacaattcactttagagt |
6996389 |
T |
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| Q |
119 |
gtaaaacaagta-tctcaactatgatgaataaatcaattattgatgttaccaggacatgcatagtaattttatgaatgtattaaaatattaaccattgat |
217 |
Q |
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| T |
6996388 |
gtaaaccaagtaatctcaactatgatgaataaatcaattattgatgttaccaggacatgcatagtaattttatgaatgtattaaaatattaaccattgat |
6996289 |
T |
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| Q |
218 |
tttcttattaacagttgagattacttgcttcaccttctgt |
257 |
Q |
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| T |
6996288 |
tttcttattaacagttgagattacttgcttcaccttctgt |
6996249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 7028882 - 7028758
Alignment:
| Q |
19 |
caattgccataaaaaatcagctagccttaatgtctgtcatcaagaaagctagaagaaaaacgattctcgctcttcaaaagtggacaattcactttagagt |
118 |
Q |
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| T |
7028882 |
caattgccattaaaaatcagctagtcataatggc----atccagaaagcaataagaaaaatgaatttcacttcgcaaaactggacaattcactttagagt |
7028787 |
T |
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| Q |
119 |
gtaaaacaagt-atctcaactatgatgaa |
146 |
Q |
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| T |
7028786 |
gtaaaacaagtaatctcaacaatgatgaa |
7028758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 333515 - 333459
Alignment:
| Q |
187 |
ttatgaatgtattaaaatattaaccattgattttcttattaacagttgagattactt |
243 |
Q |
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| T |
333515 |
ttataaatgtattgaaatatcaacaattgattttcttattaatgattgagattactt |
333459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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