View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12275_low_9 (Length: 245)

Name: NF12275_low_9

Description: NF12275

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12275_low_9

[»] chr4 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 173; E-Value: 4e-93

Query Start/End: Original strand, 48 - 224

Target Start/End: Complemental strand, 19506470 - 19506294

Alignment:

Q	48	atatgctatcatcacaaggttgatttgcatgacttaccatggccactagcattgcattcaccaccatatcagcagggatctgcttcaaattaacacaagc	147	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19506470	atatgctatcatcacaaggttgatttgcatgacttaccatggccactagcattgcattcaccaccatatcagcagggatctgcttcaaattaacacaagc	19506371	T

Q	148	ataagtataaatcaattttgtctaggcctaattatacatttagttatgttatttttttctaatgcacaattttggtc	224	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	19506370	ataagtataaatcaattttgtctaggcctaattatacatttagttatgttatttttttctaatacacaattttggtc	19506294	T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 64 - 132

Target Start/End: Original strand, 36194258 - 36194326

Alignment:

Q	64	aggttgatttgcatgacttaccatggccactagcattgcattcaccaccatatcagcagggatctgctt	132	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|
T	36194258	aggttgatttgcatgagccaccatagccactaacattgcattgaccaccatgtcagctggtatctgctt	36194326	T

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