View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12276_high_3 (Length: 497)
Name: NF12276_high_3
Description: NF12276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12276_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 487
Target Start/End: Complemental strand, 14527355 - 14526884
Alignment:
| Q |
17 |
atgttcctgatacaactactttccctctggcatagcctttatttttcggtgcatctcgaaccgctctt-aacactgcctccttcgctgctgcttgaaaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14527355 |
atgttcctgatacaactactttccctctggcatagcctttatttttcggtgcatctcgaaccgctctttaacactgcctccttcgctgctgcttgaaaac |
14527256 |
T |
|
| Q |
116 |
ccgagctcttcttagttgtgttcccacacacagttctatcttcttttcctgtatactcactnnnnnnnctatagttcgcagacctcgtgaagcaaccatc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||| |
|
|
| T |
14527255 |
ccgagctcttcttagttgtgttcccacacacagttctatcttcttttcctgtatactcactaaaaaaactatagttcacagacctcatgaagcaaccatc |
14527156 |
T |
|
| Q |
216 |
aaggtaaatgtgaccggagttataagggaagcactgaggaagaaccgtgcgcgcctcagcataacacaacacacagtcaagtaatgaaagatctccatag |
315 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14527155 |
aaggtaaatgcgaccggagttataagggaagcactgaggaagaaccgtgcgcgcctcagcataacacaacacacagtcaagtaatgaaagatatccatag |
14527056 |
T |
|
| Q |
316 |
cattgtgctaggccatagttatcatcaggtcctgtccctgtaactgctgtgccgaagccggtactgcgcatctgctcgctaatcttctccatagtcgcaa |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14527055 |
cattgtgctaggccatagttatcatcaggtcctgtccctgtaactgctgtgccgaagccggtactgcgcatctgctcgctaatcttctccatagttgcaa |
14526956 |
T |
|
| Q |
416 |
caaaattcggaacaaagatgcttgtgttatgctctacttgatggccacatgttatcataactgtctctgctc |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14526955 |
caaaattcggaacaaagatgcttgtgttatgctctacttgatggccacatgttatcataactgtctttgctc |
14526884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University