View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12276_high_4 (Length: 399)
Name: NF12276_high_4
Description: NF12276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12276_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 2 - 393
Target Start/End: Complemental strand, 20899367 - 20898973
Alignment:
| Q |
2 |
gaatataattgtggggtcacagtttctgctgctgct---acctttgtttcttgatagttacatttttcttttcacttgagcttgtggatgtaataactgt |
98 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20899367 |
gaatataattgtggggtcacagttgctgctgctgctgctacctttgtttcatggaagttacatttttcttttcacttgagcttgtggatgtaataactgt |
20899268 |
T |
|
| Q |
99 |
gagaggtaaacttgacactgtaaaacagttttaccaatcttaaaacctggaactacagtgaaagcaacttgttgctcaagttcatctgcttgtgctactt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20899267 |
gagaggtaaacttgacactgtaaaacagttttaccaatcttaaaacctggaactacagtgaaagcaacttgttgctcaagttcatctgcttgtgctactt |
20899168 |
T |
|
| Q |
199 |
catcatcatttacaacactctccatgtatacatcagagaatctacaacctttccctattggaaatatttcagcttgaggttcaaaagaaaacgctaagca |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||| |
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| T |
20899167 |
catcatcatttacaacactctccatgtatacatcagagaatctacaacctttccctatttgaaagatttcagcttgaggctcaaaagaaaatgctaagca |
20899068 |
T |
|
| Q |
299 |
atgcagaagccataccctcttggccatttcagcaaatgacgtgaacaagttgttgtcatcgggaaaatctccaacattcctttgtttcatctcac |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20899067 |
atgcagaagccataccctcttggccatttcagcaaatgacgtgaacaagttgttgtcatcgggaaaatctccaacattcctttgtttcatgtcac |
20898973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 31767275 - 31767210
Alignment:
| Q |
101 |
gaggtaaacttgacactgtaaaacagttttaccaatcttaaaacctggaactacagtgaaagcaac |
166 |
Q |
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| T |
31767275 |
gaggtaaacttgacactgtaaaacagttttaccaatcctaaaaccaggaacaacagtaaaaccaac |
31767210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 31767148 - 31767027
Alignment:
| Q |
213 |
acactctccatgtatacatcagagaatctacaacctttccctattggaaatatttcagcttgaggttcaaaagaaaacgctaagcaatgcagaagccata |
312 |
Q |
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||||| |||||||| |||||||| |||||||| ||||| || | | |||| |||||||||||| ||||||||||| ||||| ||||||| || | | |
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| T |
31767148 |
acactttccatgtacacatcagaaaatctacacccttttcccacttgaaagatttcagcttgaacctcaaaagaaaaggctaaacaatgcaagagataaa |
31767049 |
T |
|
| Q |
313 |
ccctcttggccatttcagcaaa |
334 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
31767048 |
ccctcttagccatttcagcaaa |
31767027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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