View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12276_low_1 (Length: 567)
Name: NF12276_low_1
Description: NF12276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12276_low_1 |
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| [»] scaffold0034 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 301 - 554
Target Start/End: Complemental strand, 31031808 - 31031555
Alignment:
| Q |
301 |
aattacattggtgatcctgtattttcagcatatttttgaatacttcactgaaagaactcctcggtcgtattttgaagaaagggaagcttcccttgtatgg |
400 |
Q |
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| T |
31031808 |
aattacattggtgatcctgtattttcagcatatttttgaatacttcactgaaagaactcctcggtcgtattttgaagaaagggaagcttcccttgtatgg |
31031709 |
T |
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| Q |
401 |
aattacagacatgcaggtacttaagttgtgtttaaaaagacgtgnnnnnnngttttgcatgttgttctccagttactaattctctcacacaatcatagat |
500 |
Q |
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| T |
31031708 |
aattacagacatgcaggtacttaagttgtgtttaaaaagacgtgtttttttgttttgcatgttgttctccagttactaattctctcacacaatcatagat |
31031609 |
T |
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| Q |
501 |
gttgagtttgggaaacttcaagcaagggacatgctccaacatctctgcacaggt |
554 |
Q |
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| T |
31031608 |
gttgagtttgggaaacttcaagcaagggacatgctccaacatctctgcacaggt |
31031555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 31032091 - 31031864
Alignment:
| Q |
18 |
agtggaagtggtagaacacttctagatgaagtaaatctctatacattacttccatctttgtgaactactaggtccacttctaacttgtcgttattacaga |
117 |
Q |
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| T |
31032091 |
agtggaagtggtagaacacttctagatgaagtaaatctctatacattacttccatctttgtgaactactaggtccacttctaacttgtcgttattacaga |
31031992 |
T |
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| Q |
118 |
acttcaaagaatacaacacttggctagcagcagagaatgggatgtttctaaacccttcaaatggagaatggatgactacaatgccagaacaactaaacat |
217 |
Q |
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| T |
31031991 |
acttcaaagaatacaacacttggctagcagcagagaatgggatgtttttaaacccttcaaatggagaatggatgactacaatgccagaacaactaaacat |
31031892 |
T |
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| Q |
218 |
ggaatgggttgacagtgtaaaggtgctt |
245 |
Q |
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| T |
31031891 |
ggaatgggttgacagtgtaaaggtgctt |
31031864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 86754 - 86625
Alignment:
| Q |
113 |
acagaacttcaaagaatacaacacttggctagcagcagagaatgggatgtttctaaacccttcaaatggagaatggatgactacaatgccagaacaacta |
212 |
Q |
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| T |
86754 |
acagaacttcaaagaatacgacatgtggttggtagcagagaatgggatgtttttacaaccttcaaagggtgagtggatgacaacaatgcccgagcatctg |
86655 |
T |
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| Q |
213 |
aacatggaatgggttgacagtgtaaaggtg |
242 |
Q |
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| T |
86654 |
aatatggaatgggttgacagcgtgaaggtg |
86625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 497 - 554
Target Start/End: Complemental strand, 86359 - 86302
Alignment:
| Q |
497 |
agatgttgagtttgggaaacttcaagcaagggacatgctccaacatctctgcacaggt |
554 |
Q |
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| T |
86359 |
agatgttgaatttggcaaacttcaagcaagagacatgctccaacatctgtggacaggt |
86302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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