View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12276_low_11 (Length: 249)
Name: NF12276_low_11
Description: NF12276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12276_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 7561229 - 7561415
Alignment:
| Q |
9 |
atatggagtccatatattcaacttttgtggactgcataaatagcgagaaactgttggtgatagagagaaactgtttagagacgacggagagagactcaaa |
108 |
Q |
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| T |
7561229 |
atatggagtccatatattcaacttttgtggactgcataaatagcgagaaactgttggtgatagagagaaactgtttagagac-------------tctaa |
7561315 |
T |
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| Q |
109 |
acagcggtcatcctcgccattgttgaggaacttgaagacatgtttccaacagtcatcaggtaaataaaaatcagcagcacaaattgttgttcttgttctt |
208 |
Q |
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| T |
7561316 |
acagcggtcatcctcgccattgttgaggaacttgaagacatgtttccaacagtcatcaggtaaataaaaatcagcagcacaaattgttgttcttgttctt |
7561415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 183
Target Start/End: Original strand, 7555450 - 7555572
Alignment:
| Q |
61 |
gttggtgatagagagaaactgtttagagacgacggagagagactcaaaacagcggtcatcctcgccattgttgaggaacttgaagacatgtttccaacag |
160 |
Q |
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| T |
7555450 |
gttggtgatagagagaaactgtttggaaacgagggagagagtcttcaaataacggttgtcgtcaccgttgttgagaaatttgaagacaagttgccaacat |
7555549 |
T |
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| Q |
161 |
tcatcaggtaaataaaaatcagc |
183 |
Q |
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| T |
7555550 |
tcatcgggtaaataaaaagcagc |
7555572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 9581951 - 9581994
Alignment:
| Q |
61 |
gttggtgatagagagaaactgtttagagacgacggagagagact |
104 |
Q |
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| T |
9581951 |
gttggtgatagagagaaactgtttggagacgacagaaagagact |
9581994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 44575224 - 44575182
Alignment:
| Q |
62 |
ttggtgatagagagaaactgtttagagacgacggagagagact |
104 |
Q |
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| T |
44575224 |
ttggtgattgagagaaactgttttgagacgatggagagagact |
44575182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 566758 - 566795
Alignment:
| Q |
140 |
ttgaagacatgtttccaacagtcatcaggtaaataaaa |
177 |
Q |
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||||||||| ||| |||||||||||||||||||||||| |
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| T |
566758 |
ttgaagacacgttcccaacagtcatcaggtaaataaaa |
566795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 2525771 - 2525815
Alignment:
| Q |
58 |
actgttggtgatagagagaaactgtttagagacgacggagagaga |
102 |
Q |
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| T |
2525771 |
actgttggtgatggacagaaactgttttgagacgagggagagaga |
2525815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 6007679 - 6007723
Alignment:
| Q |
58 |
actgttggtgatagagagaaactgtttagagacgacggagagaga |
102 |
Q |
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| T |
6007679 |
actgttggtgatggagaggaactgtttcgagacgagggagagaga |
6007723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 15091400 - 15091356
Alignment:
| Q |
58 |
actgttggtgatagagagaaactgtttagagacgacggagagaga |
102 |
Q |
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| T |
15091400 |
actgttggtgatggagaggaactgtttggagacgagggagagaga |
15091356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 9412443 - 9412499
Alignment:
| Q |
125 |
ccattgttgaggaacttgaagacatgtttccaacagtcatcaggtaaataaaaatca |
181 |
Q |
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|||| ||||||||| ||||||| | || |||||| ||||||||||||||||||||| |
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| T |
9412443 |
ccatcgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatca |
9412499 |
T |
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