View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12276_low_13 (Length: 243)
Name: NF12276_low_13
Description: NF12276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12276_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 41945534 - 41945295
Alignment:
| Q |
1 |
atatatgtaacatttttagacctctagtttgtaaaattacgca---ttcagggtgtaattttcttccctctgattttagatggtctattggccccagtat |
97 |
Q |
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| T |
41945534 |
atatatgtaacatttttagacctctagtttgtaaatttacgcaatcttcagggtgtaattttcttccctctaattttagatggtctattggccccagtat |
41945435 |
T |
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| Q |
98 |
ttgtataatttcttagtgttacgggtacataattggctgagctatttggttctgtatcgtactaaagccttcagaagtggtccgcatgttcagtgtccga |
197 |
Q |
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| T |
41945434 |
ttgtataatttcttagtgttatgggcacataattggctgagctatttggttctgtatcgtactaaagccttcagaagtggtccgcatgttcagtgtccga |
41945335 |
T |
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| Q |
198 |
agatgcgacagtggtttgaaagatgcatacacaggttctg |
237 |
Q |
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| T |
41945334 |
agattcgacagtggtttgaaagatgcatacatagtttctg |
41945295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 41954352 - 41954167
Alignment:
| Q |
44 |
ttcagggtgtaattttcttccctctgattttagatggtctattggccccagtatt---tgtataatttcttagtgttacgggt--acataattggctgag |
138 |
Q |
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| T |
41954352 |
ttcagggtgtaattttcctccctctgattttagatggtctattggccctagtattatctgtataatttcttagttttatgggggcacataattgactggt |
41954253 |
T |
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| Q |
139 |
ctatttggttctgtatcgtactaaagccttcagaagtggtccgcatgttcagtgtccgaagatgcgacagtggtttgaaagatgca |
224 |
Q |
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| T |
41954252 |
gtatttggttctgtatggtactaaaaccttcagaagtggtccgtatgttcagtgtcggaagatgcgacaatagtttgaaagatgca |
41954167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 1214541 - 1214359
Alignment:
| Q |
47 |
agggtgtaattttcttccctctgattttagatggtctattggccccagtatt---tgtataatttcttagtgttacgggt--acataattggctgagcta |
141 |
Q |
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| T |
1214541 |
agggtgtaattttcctccctctgattttagatggtctattgaccctagtattatctgtataatttcttagttttatgggggcacatacttgactggtgta |
1214442 |
T |
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| Q |
142 |
tttggttctgtatcgtactaaagccttcagaagtggtccgcatgttcagtgtccgaagatgcgacagtggtttgaaagatgca |
224 |
Q |
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| T |
1214441 |
tttggttctgtatggtactaaaaccttcagaagtggtccgtatgttcagtgtcagaagatgcgacgatagtttgaaagatgca |
1214359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 44586335 - 44586244
Alignment:
| Q |
57 |
tttcttccctctgattttagatggtctattggccccagtatttgtataatttcttagtgttacgggtacataattggctgagctatttggtt |
148 |
Q |
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| T |
44586335 |
tttcttccctctgattttagatggtctattggccctagtatttgtataatttattagtgttatgggcacataattgggtgagttatttggtt |
44586244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 44586238 - 44586200
Alignment:
| Q |
190 |
gtgtccgaagatgcgacagtggtttgaaagatgcataca |
228 |
Q |
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| T |
44586238 |
gtgtccgaagatgcgatagtagtttgaaagatgcataca |
44586200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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