View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12276_low_2 (Length: 522)

Name: NF12276_low_2
Description: NF12276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12276_low_2
NF12276_low_2
[»] chr4 (13 HSPs)
chr4 (16-522)||(38226461-38226967)
chr4 (361-522)||(38214082-38214242)
chr4 (16-116)||(38253597-38253697)
chr4 (16-147)||(38214412-38214544)
chr4 (402-521)||(38238001-38238120)
chr4 (399-521)||(38242976-38243099)
chr4 (16-165)||(38238349-38238496)
chr4 (16-114)||(38220488-38220586)
chr4 (16-143)||(38248454-38248582)
chr4 (416-521)||(38220121-38220226)
chr4 (380-522)||(38248175-38248316)
chr4 (380-522)||(38253328-38253470)
chr4 (24-114)||(38243336-38243426)
[»] chr6 (4 HSPs)
chr6 (375-522)||(17454557-17454708)
chr6 (401-522)||(17433478-17433600)
chr6 (24-105)||(17455108-17455189)
chr6 (24-154)||(17433958-17434089)


Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 16 - 522
Target Start/End: Complemental strand, 38226967 - 38226461
Alignment:
Q  16 atatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatgattgcaaggtaaatgaattcattaagaaacat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38226967 atatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatgattgcaaggtaaatgaattcattaagaaacat 38226868  T
Q  116 tattttttagaaatagattccgtgtagttgggctaccctagattcacgcagacaaatcatcggttgatgatggatcaagatcaaaaagttcacataatat 215  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38226867 tagtttttagaaatagattccgtgtagttgggctaccctagattcacgcagacaaatcatcggttgatgatggatcaagatcaaaaagttcacagaatat 38226768  T
Q  216 ttagcttttgattattttaaaatcaatgacactgggtttggaatccctagacccttcaatcttgatccaacagtcattaatgtgcttattgcgtgtatgt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38226767 ttagcttttgattattttaaaatcaatgacactgggtttggaatccctagacccttcaatcttgatccaacagtcattaatgtgcttattgcgtgtatgt 38226668  T
Q  316 aaagtctgtcgactgcagagaatccttacttgtagtttttgtcaactcaatttaactctaaaacataaaactagtccattactttgttgggtatatagtg 415  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38226667 aaagtctgtagactgcagagaatccttacttgtagtttttgtcaactcaatttaactctaaaacataaaactagtccattactttgttgggtatatagtg 38226568  T
Q  416 agcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38226567 agcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagt 38226468  T
Q  516 ctcccac 522  Q
    |||||||    
T  38226467 ctcccac 38226461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 361 - 522
Target Start/End: Complemental strand, 38214242 - 38214082
Alignment:
Q  361 ctcaatttaactctaaaacataaaactagtccattactttgttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatc 460  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||| ||||||||||  ||||||||||||||||||    
T  38214242 ctcaatttaactctaaaacacaaaactagtccattactttgttgggtgtttagtgagcaacatggattt-tttgtttcaggttgagtatcaagttgaatc 38214144  T
Q  461 ttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccac 522  Q
    |||   |||||| |||||    ||||||||||||||| |||||| |||||||||||||||||    
T  38214143 ttgtaccacagatcataatttgagaaatggttgtgttcatgtgatgaggacaagtctcccac 38214082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 38253697 - 38253597
Alignment:
Q  16 atatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatgattgcaaggtaaatgaattcattaagaaacat 115  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||||    
T  38253697 atatataattgatgttactgatactttgaaaccatcagatgattcaaaagaattgaactcagaccatgattgcaaggtaagtaaattcattaagaaacat 38253598  T
Q  116 t 116  Q
    |    
T  38253597 t 38253597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 38214544 - 38214412
Alignment:
Q  16 atatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatgattgcaaggtaaatgaattcattaagaaac-a 114  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||| ||||||| |    
T  38214544 atatataattgatgttactgatagtttgaaaccatcagatgattcaaaaggattgaactcggatcatgattgcaaggtaaatgaattcatcaagaaacta 38214445  T
Q  115 ttattttttagaaatagattccgtgtagttggg 147  Q
     || ||| | ||||| |||||| ||||||||||    
T  38214444 gtagtttgtggaaatggattccatgtagttggg 38214412  T

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Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 402 - 521
Target Start/End: Complemental strand, 38238120 - 38238001
Alignment:
Q  402 ttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatg 501  Q
    |||||||||||||||||||||||  ||| ||||||||||| |||||||||||||||||||||| ||||||||||||| ||  |||||   |||||| |||    
T  38238120 ttgggtatatagtgagcaacatggttttctttgtttcagaatgagtatcaagttgaatcttgcagcacagaccataaggagggaaattcctgtgttcatg 38238021  T
Q  502 tgaagaggacaagtctccca 521  Q
    ||||||||||||||||||||    
T  38238020 tgaagaggacaagtctccca 38238001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 399 - 521
Target Start/End: Complemental strand, 38243099 - 38242976
Alignment:
Q  399 ttgttgggtat-atagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgtt 497  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||  ||   |||||| ||||||    
T  38243099 ttgttgggtatcatagtgagcaacatggatttctttgtttcagattgagtatcaagttgaatcttgcagcacagaccatagggaggaaaatgggtgtgtt 38243000  T
Q  498 gatgtgaagaggacaagtctccca 521  Q
     |||||||||||||||||||||||    
T  38242999 catgtgaagaggacaagtctccca 38242976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 38238496 - 38238349
Alignment:
Q  16 atatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatgattgcaaggtaaatgaattcattaagaaacat 115  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| | ||||| ||||||||||||| |||||||| |||||||    
T  38238496 atatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatgaactcagatcatgactgcaaggtaaatgcattcattacgaaacat 38238397  T
Q  116 tattttttagaaatagattccgtgtagttgggctaccctagattcacgca 165  Q
       ||| | ||||| | ||||||||||||||| | ||||  |||||||||    
T  38238396 --gtttgtcgaaatgggttccgtgtagttgggatgccctgcattcacgca 38238349  T

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Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 38220586 - 38220488
Alignment:
Q  16 atatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatgattgcaaggtaaatgaattcattaagaaaca 114  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| | |||||||||||||||||  ||||||| ||||||||    
T  38220586 atatatacttgatgttactgatactttgaaactatcagataattcaaaaggaatgaactcagaacatgattgcaaggtaaacaaattcatcaagaaaca 38220488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 38248582 - 38248454
Alignment:
Q  16 atatatacttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatgattgcaaggtaaatgaattcattaagaaaca- 114  Q
    ||||||| ||||||| |||| || |||||||| ||||||||||||||||||| |||| ||| | ||||||||||||||||||| |||||| ||||||||     
T  38248582 atatataattgatgtcactggtagtttgaaactatcagatgattcaaaaggaatgaaatcagatcatgattgcaaggtaaatgcattcatcaagaaacat 38248483  T
Q  115 ttattttttagaaatagattccgtgtagt 143  Q
    ||| ||| | |||||||||||||||||||    
T  38248482 ttagtttgtggaaatagattccgtgtagt 38248454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 521
Target Start/End: Complemental strand, 38220226 - 38220121
Alignment:
Q  416 agcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagt 515  Q
    ||||| ||| |||| ||||||||||  |||||||||||||||||| |||  |||| ||||||| ||  |||||||||||||| |||||||||||| ||||    
T  38220226 agcaatatggatttctttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagt 38220127  T
Q  516 ctccca 521  Q
    ||||||    
T  38220126 ctccca 38220121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 522
Target Start/End: Complemental strand, 38248316 - 38248175
Alignment:
Q  380 ataaaactagtccattactttgttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaa 479  Q
    |||| ||||||||| || |||||| ||||||| | ||||||| |  |||| ||||||||||  ||||||||| |||||||||||| ||||||| ||  |     
T  38248316 ataacactagtccagtagtttgttaggtatattgcgagcaacgtagatttctttgtttcaggttgagtatca-gttgaatcttgcagcacagatcaatag 38248218  T
Q  480 gaaagaaatggttgtgttgatgtgaagaggacaagtctcccac 522  Q
    ||  ||||||| |||||| ||||||| ||||||||||||||||    
T  38248217 gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccac 38248175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 522
Target Start/End: Complemental strand, 38253470 - 38253328
Alignment:
Q  380 ataaaactagtccattactttgttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaa 479  Q
    |||| ||||||||||||  ||||||||||||  | |||||||||  |||| ||||||||||  ||||||| ||||| |||||||| ||| ||| || ||     
T  38253470 ataacactagtccattaagttgttgggtataatgcgagcaacatagatttctttgtttcaggttgagtatgaagttaaatcttgcagcatagatcaaaag 38253371  T
Q  480 gaaagaaatggttgtgttgatgtgaagaggacaagtctcccac 522  Q
    ||  ||||||| |||||| |||| || ||||||||||||||||    
T  38253370 gagggaaatgggtgtgttcatgtaaaaaggacaagtctcccac 38253328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 38243426 - 38243336
Alignment:
Q  24 ttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatgattgcaaggtaaatgaattcattaagaaaca 114  Q
    |||||||||| |||| | |||||| ||||||| | |||||||||  |||||   | |||||||||||||||||||||||||| ||||||||    
T  38243426 ttgatgttaccgatagtatgaaacaatcagataactcaaaaggaacgaactttgatcatgattgcaaggtaaatgaattcatcaagaaaca 38243336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 375 - 522
Target Start/End: Complemental strand, 17454708 - 17454557
Alignment:
Q  375 aaaacataaaactagtccattactttgttgggtata----tagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcaca 470  Q
    ||||||||| |  ||| |||| ||||||||||||||    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  17454708 aaaacataacaacagttcatttctttgttgggtataattatagtgagcaacatgaatttctttgtttcagattgagtatcaagttgaatcttgcagcaca 17454609  T
Q  471 gaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccac 522  Q
    |||||| | ||  |||||||||||||| ||||||||||||||||||||||||    
T  17454608 gaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctcccac 17454557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 401 - 522
Target Start/End: Complemental strand, 17433600 - 17433478
Alignment:
Q  401 gttgggtat-atagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttga 499  Q
    ||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| ||| ||||||| | ||   ||||||||||||| |    
T  17433600 gttgggtattatagtgagcaacatggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttca 17433501  T
Q  500 tgtgaagaggacaagtctcccac 522  Q
    |||||||||||||||||||||||    
T  17433500 tgtgaagaggacaagtctcccac 17433478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 17455189 - 17455108
Alignment:
Q  24 ttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatgattgcaaggtaaatgaattcat 105  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| |||||||| | |||||||| ||||||||||| |||||    
T  17455189 ttgatgttactgatagtttgaaactatcagatgattcaaaaggaatgaactcagatcatgattgtaaggtaaatgatttcat 17455108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 17434089 - 17433958
Alignment:
Q  24 ttgatgttactgatactttgaaaccatcagatgattcaaaaggattgaactcaaaccatgattgcaaggtaaatgaattcattaagaaacat-tattttt 122  Q
    ||||||||||||||| ||| |||| |||| ||||||||||||||  ||||||| | |||||||| ||||||||||| ||||| ||||| ||| |  |||     
T  17434089 ttgatgttactgatagtttaaaactatcaaatgattcaaaaggaacgaactcagatcatgattgtaaggtaaatgatttcatcaagaatcatgttgtttg 17433990  T
Q  123 tagaaatagattccgtgtagttgggctaccct 154  Q
    | ||||| ||||||||||||||||| ||||||    
T  17433989 ttgaaatggattccgtgtagttgggataccct 17433958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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