View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12276_low_5 (Length: 367)

Name: NF12276_low_5
Description: NF12276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12276_low_5
NF12276_low_5
[»] chr1 (5 HSPs)
chr1 (130-351)||(41670396-41670617)
chr1 (130-351)||(40795765-40795986)
chr1 (130-260)||(29391462-29391592)
chr1 (7-68)||(41670273-41670334)
chr1 (7-67)||(40795642-40795702)
[»] chr4 (12 HSPs)
chr4 (132-347)||(23415774-23415989)
chr4 (132-347)||(23885825-23886040)
chr4 (130-337)||(34662116-34662323)
chr4 (130-347)||(26434020-26434237)
chr4 (135-347)||(23402075-23402287)
chr4 (130-347)||(26832731-26832948)
chr4 (135-347)||(23453437-23453649)
chr4 (132-347)||(23868730-23868945)
chr4 (130-347)||(26435800-26436017)
chr4 (132-347)||(24307221-24307436)
chr4 (135-304)||(23408648-23408817)
chr4 (225-347)||(23451797-23451919)
[»] chr7 (2 HSPs)
chr7 (130-326)||(40180356-40180552)
chr7 (8-58)||(40180624-40180674)
[»] chr8 (1 HSPs)
chr8 (133-256)||(29684699-29684822)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 130 - 351
Target Start/End: Original strand, 41670396 - 41670617
Alignment:
Q  130 gcgttgaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcat 229  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41670396 gcgttgaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcat 41670495  T
Q  230 caatgatatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgt 329  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41670496 caatgatatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgt 41670595  T
Q  330 cttgttctccccggtgaacttg 351  Q
    ||||||||||||||||||||||    
T  41670596 cttgttctccccggtgaacttg 41670617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 130 - 351
Target Start/End: Original strand, 40795765 - 40795986
Alignment:
Q  130 gcgttgaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcat 229  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  40795765 gcgtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcat 40795864  T
Q  230 caatgatatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgt 329  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||  | ||||||||||| ||||| ||||| ||||| ||||| |||||||||||||||    
T  40795865 caatgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattcagactgctgttcgt 40795964  T
Q  330 cttgttctccccggtgaacttg 351  Q
    || ||||| ||||| |||||||    
T  40795965 ctcgttcttcccggcgaacttg 40795986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 29391462 - 29391592
Alignment:
Q  130 gcgttgaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcat 229  Q
    ||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| || ||||| ||   ||| ||||||||||| |||||||| |||||    
T  29391462 gcgttgaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcat 29391561  T
Q  230 caatgatatctttgagaagctcgctcaggaa 260  Q
    |||||||||||||||||| ||||||||||||    
T  29391562 caatgatatctttgagaaactcgctcaggaa 29391592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 41670273 - 41670334
Alignment:
Q  7 gagagaagaaacccgccgagaagaagccagcagagaaggcgccagcagagaaaaccaaagcc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41670273 gagagaagaaacccgccgagaagaagccagcagagaaggcgccagcagagaaaaccaaagcc 41670334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 40795642 - 40795702
Alignment:
Q  7 gagagaagaaacccgccgagaagaagccagcagagaaggcgccagcagagaaaaccaaagc 67  Q
    |||||||||| ||||| ||||||||||||||||| || || || |||||||||||||||||    
T  40795642 gagagaagaagcccgctgagaagaagccagcagaaaaagctcccgcagagaaaaccaaagc 40795702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 132 - 347
Target Start/End: Complemental strand, 23415989 - 23415774
Alignment:
Q  132 gttgaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatca 231  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  23415989 gttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatca 23415890  T
Q  232 atgatatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtct 331  Q
    |||||||||| |||||||| ||||| |||||||||||||||||  | |||||||||||||| |||||||||||  |||| || |||||||| ||  | ||    
T  23415889 atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact 23415790  T
Q  332 tgttctccccggtgaa 347  Q
    |||||| || ||||||    
T  23415789 tgttcttcctggtgaa 23415774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 132 - 347
Target Start/End: Original strand, 23885825 - 23886040
Alignment:
Q  132 gttgaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatca 231  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  23885825 gttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatca 23885924  T
Q  232 atgatatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtct 331  Q
    |||||||||| |||||||| ||||| |||||||||||||||||  | |||||||||||||| |||||||||||  |||| || |||||||| ||  | ||    
T  23885925 atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggct 23886024  T
Q  332 tgttctccccggtgaa 347  Q
    |||||| || ||||||    
T  23886025 tgttcttcctggtgaa 23886040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 130 - 337
Target Start/End: Complemental strand, 34662323 - 34662116
Alignment:
Q  130 gcgttgaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcat 229  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| || ||||| || |||||||| |||||    
T  34662323 gcgttgaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcat 34662224  T
Q  230 caatgatatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgt 329  Q
    |||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || || |||||  |||| || |||||||||||| |     
T  34662223 caatgatatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgctgttagg 34662124  T
Q  330 cttgttct 337  Q
    ||||||||    
T  34662123 cttgttct 34662116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 130 - 347
Target Start/End: Original strand, 26434020 - 26434237
Alignment:
Q  130 gcgttgaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcat 229  Q
    |||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| || ||||| ||||||||||| |||||    
T  26434020 gcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcat 26434119  T
Q  230 caatgatatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgt 329  Q
    |||||||||||| ||||| |||||||| |||||||||||||||||  | |||||||||||||| |||||||||||  |||| || ||||| || ||  |     
T  26434120 caatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagg 26434219  T
Q  330 cttgttctccccggtgaa 347  Q
    |||||||| |||||||||    
T  26434220 cttgttctgcccggtgaa 26434237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 135 - 347
Target Start/End: Original strand, 23402075 - 23402287
Alignment:
Q  135 gaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg 234  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  23402075 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23402174  T
Q  235 atatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtcttgt 334  Q
    ||||||| |||||||| ||||| |||||||||||||||||  | |||||||||||||| |||||||||||  |||| || |||||||| ||  | |||||    
T  23402175 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgt 23402274  T
Q  335 tctccccggtgaa 347  Q
    ||| || ||||||    
T  23402275 tcttcctggtgaa 23402287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 130 - 347
Target Start/End: Original strand, 26832731 - 26832948
Alignment:
Q  130 gcgttgaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcat 229  Q
    |||||||||| ||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| || ||||| ||||||||||| |||||    
T  26832731 gcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcat 26832830  T
Q  230 caatgatatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgt 329  Q
    |||||||||||| ||||| |||||||| |||||||||||||||||  | |||||||||||||| |||||||||||  |||| || ||||| || ||  |     
T  26832831 caatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagg 26832930  T
Q  330 cttgttctccccggtgaa 347  Q
    |||||||| |||||||||    
T  26832931 cttgttctgcccggtgaa 26832948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 135 - 347
Target Start/End: Complemental strand, 23453649 - 23453437
Alignment:
Q  135 gaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg 234  Q
    ||||| |||||||||||||||||||| |||||||| || ||||| || ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  23453649 gaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23453550  T
Q  235 atatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtcttgt 334  Q
    ||||||| |||||||| ||||| |||||||||||||||||  | |||||||||||||| |||||||||||  |||| || |||||||| ||  |||||||    
T  23453549 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagtcttgt 23453450  T
Q  335 tctccccggtgaa 347  Q
    ||| || ||||||    
T  23453449 tcttcctggtgaa 23453437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 132 - 347
Target Start/End: Original strand, 23868730 - 23868945
Alignment:
Q  132 gttgaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatca 231  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| || ||||| || |||||||| |||||||    
T  23868730 gttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca 23868829  T
Q  232 atgatatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtct 331  Q
    |||||||||| ||||| || ||||| |||||||||||||||||  | |||||||||||||| |||||||||||  |||| || |||||||||||  | ||    
T  23868830 atgatatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagact 23868929  T
Q  332 tgttctccccggtgaa 347  Q
    |||||| || ||||||    
T  23868930 tgttcttcctggtgaa 23868945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 130 - 347
Target Start/End: Original strand, 26435800 - 26436017
Alignment:
Q  130 gcgttgaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcat 229  Q
    |||||||||| ||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| || ||||| ||||||||||| |||||    
T  26435800 gcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcat 26435899  T
Q  230 caatgatatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgt 329  Q
    |||||||||||| ||||| ||| |||| ||||| |||||||||||  | |||||||||||||| |||||||||||  |||| || ||||| || ||  |     
T  26435900 caatgatatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagg 26435999  T
Q  330 cttgttctccccggtgaa 347  Q
    |||||||| |||||||||    
T  26436000 cttgttctgcccggtgaa 26436017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 132 - 347
Target Start/End: Original strand, 24307221 - 24307436
Alignment:
Q  132 gttgaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatca 231  Q
    |||||||| ||||||||||| ||||||||||||||||| || ||||| || |||||||||||||||||||| || ||||| || |||||||| |||||||    
T  24307221 gttgaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca 24307320  T
Q  232 atgatatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtct 331  Q
    |||||||||| ||||| || ||||| |||||||||||||||||  | |||||||||||||| |||||||||||  |||| || |||||||||||  | ||    
T  24307321 atgatatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagact 24307420  T
Q  332 tgttctccccggtgaa 347  Q
    |||||| || ||||||    
T  24307421 tgttcttcctggtgaa 24307436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 135 - 304
Target Start/End: Complemental strand, 23408817 - 23408648
Alignment:
Q  135 gaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg 234  Q
    ||||| |||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| || ||||| ||||||||||| ||||||||||    
T  23408817 gaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatcaatg 23408718  T
Q  235 atatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttc 304  Q
    ||||||| |||||||| ||||| |||||||||||||||||  | |||||||||||||| |||||||||||    
T  23408717 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttc 23408648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 347
Target Start/End: Complemental strand, 23451919 - 23451797
Alignment:
Q  225 ttcatcaatgatatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctg 324  Q
    |||||||| ||||||||||||||||||||||| ||||  |||||||||||  | |||||||||||||| |||||||||||  |||| || ||||| || |    
T  23451919 ttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgcag 23451820  T
Q  325 ttcgtcttgttctccccggtgaa 347  Q
    |  | |||||||| |||||||||    
T  23451819 tcaggcttgttctgcccggtgaa 23451797  T

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Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 130 - 326
Target Start/End: Complemental strand, 40180552 - 40180356
Alignment:
Q  130 gcgttgaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcat 229  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||||| ||||||||||| |||||    
T  40180552 gcgttgaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcat 40180453  T
Q  230 caatgatatctttgagaagctcgctcaggaatcatccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgtt 326  Q
     || |||||||||||||| |||||||||||||| ||  |  | || ||||| ||||||||||| || || |||||| ||||||| || |||||||||    
T  40180452 taacgatatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgtt 40180356  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 40180674 - 40180624
Alignment:
Q  8 agagaagaaacccgccgagaagaagccagcagagaaggcgccagcagagaa 58  Q
    ||||||||||||||| ||||||||||| |||||||| || ||||| |||||    
T  40180674 agagaagaaacccgcggagaagaagcccgcagagaaagctccagccgagaa 40180624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 256
Target Start/End: Original strand, 29684699 - 29684822
Alignment:
Q  133 ttgaaacctacaagatctacatcttcaaggttctgaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaa 232  Q
    |||||||||||||||| || || ||||||||||| || || |||||||||| ||||||| | ||||| || ||||||||  | || ||||| ||| | ||    
T  29684699 ttgaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaa 29684798  T
Q  233 tgatatctttgagaagctcgctca 256  Q
     ||||||||| |||| ||||||||    
T  29684799 cgatatctttaagaaactcgctca 29684822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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