View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12276_low_6 (Length: 360)
Name: NF12276_low_6
Description: NF12276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12276_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 118 - 360
Target Start/End: Original strand, 26499991 - 26500220
Alignment:
| Q |
118 |
tgccatgtatccgtgagttcgagctaagatcaaaccttccaaaactcccctcaactcagccacaaaaggactacaggagtcaaggttctttgaaaatcca |
217 |
Q |
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| T |
26499991 |
tgccatgtatccgtgagttcgagctaaggtcaaaccttcaaaaactcccctcaactcagccacaaaaggactacaggagtcaaggttctttgaaaatcca |
26500090 |
T |
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| Q |
218 |
tatatcaagtgcccctcttcatttctaagtaacctgccaaccaaaaatcactgtgagtgtgaggttcagggtggacaagctgcagccacacccacacacc |
317 |
Q |
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| T |
26500091 |
tatatcaagtgcccctcttcatttct-------------actaaaaatcactgtgagtgtgagggtcagggtggacaagctgcagccacacccacacacc |
26500177 |
T |
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| Q |
318 |
ctttgcctgagggcactctctcaaaacatggatgcttgattca |
360 |
Q |
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| T |
26500178 |
ctttgcctgagggcactctctcaaaacatggatgcttgattca |
26500220 |
T |
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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 26499915 - 26499993
Alignment:
| Q |
7 |
attcttatccccgaaatatcctccgggagactttctcctgtgtgcccatcctcacgcggatcccagcatacacgggtgc |
85 |
Q |
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| T |
26499915 |
attcttatccccgaaatatcctccaggagactttctcctgtgtgcccatcctcacgtggatcccagcatatacgggtgc |
26499993 |
T |
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