View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12276_low_8 (Length: 307)
Name: NF12276_low_8
Description: NF12276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12276_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 18867217 - 18867507
Alignment:
| Q |
1 |
aacgccaatctttgtctgaccatgatcatcatactggacatggatcgaaaaatgtgttccttggtaagcaagaaattgaaaatggaactttgaaagatta |
100 |
Q |
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| T |
18867217 |
aacgccaatttttgtctgaccatgatcttaatactggacatggatcgaaaaacgtgttccttggtaagcaagaaattgaaaatggaactttgaaagatta |
18867316 |
T |
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| Q |
101 |
tgtaaagggctttaagcgacctagattagtgttggatggttgtaaattgagatataaagaagctttgcaattgatagagagtcatactcaagcacttttt |
200 |
Q |
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| T |
18867317 |
tgtaaagggctttaagcgacctagattagtgttggatggttgtaaattgagatataaagaagctttgcaactgatagagagtcatactcaagcccttttt |
18867416 |
T |
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| Q |
201 |
gagcataataaggaatgtggtttgaatgagtt---tgatgatgatgaagaagatgataggtttattgaagcttcattttctagtataaaga |
288 |
Q |
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| T |
18867417 |
gagcataataaggaatgtggtttgaatgagtttgatgatgatgatgaagaagatgataggtttattgaagcttcattttctagtataaaga |
18867507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 18881333 - 18881383
Alignment:
| Q |
64 |
gtaagcaagaaattgaaaatggaactttgaaagattatgtaaagggcttta |
114 |
Q |
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| T |
18881333 |
gtaagcaagaaaatgaaattggagatttgaaagattatataaagggcttta |
18881383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 18887979 - 18888029
Alignment:
| Q |
64 |
gtaagcaagaaattgaaaatggaactttgaaagattatgtaaagggcttta |
114 |
Q |
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| T |
18887979 |
gtaagcaagaaaatgaaattggagatttgaaagattatataaagggcttta |
18888029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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