View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12277_high_2 (Length: 429)
Name: NF12277_high_2
Description: NF12277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12277_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 46036177 - 46036532
Alignment:
| Q |
19 |
ctcttatcagtgagtatttttaggcataaatgaaaattcaaatattcatccatccaatgttcttgttgcgactgctttgtcctatgtcagtccttgtatc |
118 |
Q |
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| T |
46036177 |
ctcttatcaatgagtatttttaggcataaatgaaaattcaaatattcatccatccaatgttcttgttgcgactgctttgtcctatgtcagtccttatatc |
46036276 |
T |
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| Q |
119 |
tgttgcttgtctttttgaagcatcttgtaggtgcagaaactgtctgtaaaataatacacataatagaattacaccgatatataa--taagaacttattgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
46036277 |
tgttgcttgtctttttgaagcatcttgtaggtgcagaaactgtctgtaaaataatacacataatacaattacaccgatatataatgtaagaacttattgt |
46036376 |
T |
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| Q |
217 |
attgtcgcataagtctatattatatctgtattttaaaataactcgattcttattgtatgttgatataaaattaatttacattgataatgcatctcaattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46036377 |
attgtcgcataagtctatattatatctgtattttaaaataactcgattcttattgtatgttgatatgaaattaatttacattgataatgcatctcaattt |
46036476 |
T |
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| Q |
317 |
ctcttttatttaaaagtttttgcatttttagcatatgttcacatgtttatgttgct |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46036477 |
ctcttttatttaaaagtttttgcatttttagcatatgttcacatgtttatgttgct |
46036532 |
T |
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