View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12277_low_3 (Length: 376)

Name: NF12277_low_3
Description: NF12277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12277_low_3
NF12277_low_3
[»] chr4 (21 HSPs)
chr4 (18-369)||(4023743-4024094)
chr4 (176-362)||(4000834-4001020)
chr4 (230-361)||(3921349-3921480)
chr4 (18-99)||(3816422-3816503)
chr4 (185-342)||(3985571-3985728)
chr4 (177-361)||(3956826-3957010)
chr4 (185-353)||(3816168-3816336)
chr4 (232-358)||(3934570-3934696)
chr4 (18-91)||(4001127-4001200)
chr4 (187-346)||(4217202-4217361)
chr4 (187-328)||(3800248-3800389)
chr4 (18-91)||(3985821-3985894)
chr4 (18-90)||(3956692-3956764)
chr4 (185-353)||(3808594-3808762)
chr4 (185-285)||(4008648-4008748)
chr4 (18-83)||(3808862-3808927)
chr4 (18-91)||(3934179-3934252)
chr4 (18-91)||(4217452-4217525)
chr4 (18-83)||(4008842-4008907)
chr4 (26-81)||(4017510-4017565)
chr4 (26-83)||(3964739-3964796)
[»] chr5 (2 HSPs)
chr5 (185-361)||(13396521-13396701)
chr5 (20-90)||(13396796-13396866)


Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 4024094 - 4023743
Alignment:
Q  18 agaatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaatatttctcttcaagataaatttctcttaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4024094 agaatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaatatttctcttcaagataaatttctcttaa 4023995  T
Q  118 tcagaaataccatcgagactgtttggttcttatgcttgatgccaccatttgttttttaattttgtatcaggatctagttaatttaaaagaggttagactc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4023994 tcagaaataccatcgagactgtttggttcttatgcttgatgccaccatttgttttttaattttgtatcaggatctagttaatttaaaagaggttagactc 4023895  T
Q  218 tcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaatatggcacattgtcataatttgaaaagcgtccatc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4023894 tcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaatatggcacattgtcataatttgaaaagcgtccatc 4023795  T
Q  318 catctattttctctcttgacaagcttgtgcatttggacctaagtctctgctt 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4023794 catctattttctctcttgacaagcttgtgcatttggacctaagtctttgctt 4023743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 176 - 362
Target Start/End: Complemental strand, 4001020 - 4000834
Alignment:
Q  176 attttgtatcaggatctagttaatttaaaagaggttagactctcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaag 275  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||  ||| |  ||||| || || ||||| ||||||||||||||||| |||||||| |    
T  4001020 attttgtaacaggatctagttaatttaaaagaggttagactcaccagttcaaggttccttaaagaattaccagacttttcaaaagctacaaatcttaagg 4000921  T
Q  276 tattgaatatggcacattgtc-ataatttgaaaagcgtccatccatctattttctctcttgacaagcttgtgcatttggacctaagtc 362  Q
    ||||||||||  || |||| | || | ||| |||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||    
T  4000920 tattgaatatcacagattgcctatca-ttggaaagcgtccacccatctattttctctctagaaaagcttgtgcaattggacctaagtc 4000834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 230 - 361
Target Start/End: Original strand, 3921349 - 3921480
Alignment:
Q  230 ttcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaatatggcacattgtcataatttgaaaagcgtccatccatctattttct 329  Q
    ||||||||||||||||| |||||||||||||| || |||||||||||||||| | |  |   |||| |||||||| ||||||||||||||||||||||      
T  3921349 ttcctgaaggagttaccagacttttcaaaagccacaaatcttaaagtattgagtgtcactgcttgtgataatttggaaagcgtccatccatctattttta 3921448  T
Q  330 ctcttgacaagcttgtgcatttggacctaagt 361  Q
    ||||||| ||||||||||||||||||||||||    
T  3921449 ctcttgagaagcttgtgcatttggacctaagt 3921480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 3816503 - 3816422
Alignment:
Q  18 agaatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaatatttctcttc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  3816503 agaatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaattggatatttatcttc 3816422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 342
Target Start/End: Complemental strand, 3985728 - 3985571
Alignment:
Q  185 caggatctagttaatttaaaagaggttagactctcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaata 284  Q
    ||||||||| ||||||||||||| |||| |||||| | |||  ||  ||||||||||||||| |||||||||||||| |  |||||||| ||||||||||    
T  3985728 caggatctaattaatttaaaagaagttacactctctttttcagaagacctgaaggagttaccagacttttcaaaagccataaatcttaaggtattgaata 3985629  T
Q  285 tggcacattgtcataatttgaaaagcgtccatccatctattttctctcttgacaagct 342  Q
    |   || |||| |||  |||| ||||||||||||||||||||||||||||||||||||    
T  3985628 tccaacgttgttatatgttgacaagcgtccatccatctattttctctcttgacaagct 3985571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 361
Target Start/End: Original strand, 3956826 - 3957010
Alignment:
Q  177 ttttgtatcaggatctagttaatttaaaagaggttagactctcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagt 276  Q
    ||||||| |||||||| |||||||||||||| |||| ||||||  ||||   ||||||||||| | |||| |||||||||||||| || |||||||| ||    
T  3956826 ttttgtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgt 3956925  T
Q  277 attgaatatggcacattgtcataatttgaaaagcgtccatccatctattttctctcttgacaagcttgtgcatttggacctaagt 361  Q
    |||||||||   |  |||| ||   |||| |||| ||||||| |||||||||||||||||||| ||| || | ||||||||||||    
T  3956926 attgaatatccaaggttgttatgggttgacaagcatccatccgtctattttctctcttgacaaacttttgaaattggacctaagt 3957010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 185 - 353
Target Start/End: Complemental strand, 3816336 - 3816168
Alignment:
Q  185 caggatctagttaatttaaaagaggttagactctcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaata 284  Q
    ||||||||| ||||||||||||| ||||||||||| ||||| |  ||  | ||||||||||| |||||||||||||| |  |||||||| ||||| ||||    
T  3816336 caggatctaattaatttaaaagaagttagactctcttattcaatgttattaaaggagttaccagacttttcaaaagccataaatcttaaggtattaaata 3816237  T
Q  285 tggcacattgtcataatttgaaaagcgtccatccatctattttctctcttgacaagcttgtgcatttgg 353  Q
    |  ||  |||| || |  ||||||||||||||||||||||||| |||||| ||| ||||| ||| ||||    
T  3816236 tctcaagttgttatcagctgaaaagcgtccatccatctattttatctcttaacaggcttgagcaattgg 3816168  T

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Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 358
Target Start/End: Original strand, 3934570 - 3934696
Alignment:
Q  232 cctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaatatggcacattgtcataatttgaaaagcgtccatccatctattttctct 331  Q
    |||||||||||| || |||||||||||||| || ||||||||||||||||   |  |   ||||| ||||||| ||||||||||||||||||||||  ||    
T  3934570 cctgaaggagttgccagacttttcaaaagccacaaatcttaaagtattgacagtcactgtttgtcctaatttggaaagcgtccatccatctatttttact 3934669  T
Q  332 cttgacaagcttgtgcatttggaccta 358  Q
    ||||| |||||||||| ||||||||||    
T  3934670 cttgagaagcttgtgcgtttggaccta 3934696  T

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Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 4001200 - 4001127
Alignment:
Q  18 agaatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaatat 91  Q
    |||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||| |||||||    
T  4001200 agaatcttgttatattggacttttcacatagtcgagtggaaaatctttggtgtggagtgcaggtaattgaatat 4001127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 346
Target Start/End: Complemental strand, 4217361 - 4217202
Alignment:
Q  187 ggatctagttaatttaaaagaggttagactctcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaatatg 286  Q
    ||||||||||||||||||||| |||| ||| ||  ||||   |||| |||||||||||||| ||||||||||||||   ||||| || |||||| ||||     
T  4217361 ggatctagttaatttaaaagaagttaaactatcacattcaggattcttgaaggagttacctaacttttcaaaagctgaaaatctgaatgtattgcatatt 4217262  T
Q  287 gcacattgtcataatttgaaaagcgtccatccatctattttctctcttgacaagcttgtg 346  Q
    | | |||||| | | ||| |||| ||||||||||||||||||| || || ||||||||||    
T  4217261 gaagattgtcctcagttggaaagtgtccatccatctattttctgtcctggcaagcttgtg 4217202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 328
Target Start/End: Complemental strand, 3800389 - 3800248
Alignment:
Q  187 ggatctagttaatttaaaagaggttagactctcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaatatg 286  Q
    ||||||||||||||||||||| |||| ||| ||  ||||   |||| |||||||||||||| ||||||||||||||   ||||| || |||||| ||||     
T  3800389 ggatctagttaatttaaaagaagttacactatcacattcaggattcttgaaggagttacctaacttttcaaaagctgaaaatctgaatgtattgcatatt 3800290  T
Q  287 gcacattgtcataatttgaaaagcgtccatccatctattttc 328  Q
    | | |||||| | | ||| |||| ||||||||||||||||||    
T  3800289 gaagattgtcctcagttggaaagtgtccatccatctattttc 3800248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 3985894 - 3985821
Alignment:
Q  18 agaatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaatat 91  Q
    |||| ||||||||||||||||||||  |||| ||||| |||||||||||||||||||| ||||||| |||||||    
T  3985894 agaaacttgttatattggacttgtcgtatagcctagtagaaaagctttggtgtggagtacaggtaattgaatat 3985821  T

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Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 3956692 - 3956764
Alignment:
Q  18 agaatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaata 90  Q
    |||||||||||||||||||| |||||| ||| ||| ||||||| |||||||||||||||||| ||| ||||||    
T  3956692 agaatcttgttatattggacctgtcaggtagcctactggaaaaactttggtgtggagtgcagataattgaata 3956764  T

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Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 353
Target Start/End: Complemental strand, 3808762 - 3808594
Alignment:
Q  185 caggatctagttaatttaaaagaggttagactctcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaata 284  Q
    ||||||||| ||||||||||||| |||||| || |  |||| |||||| | ||||||||||| |||||||||||||| || ||||| || | |||  |||    
T  3808762 caggatctaattaatttaaaagaagttagattcactaattcaaaattcttaaaggagttaccagacttttcaaaagccacaaatctgaaggcatttcata 3808663  T
Q  285 tggcacattgtcataatttgaaaagcgtccatccatctattttctctcttgacaagcttgtgcatttgg 353  Q
    |   |   ||| |  | |||| |||||||||||||||||||||||||||| ||| ||||| ||| ||||    
T  3808662 tcaaaatctgtaaagagttgataagcgtccatccatctattttctctcttaacaggcttgagcaattgg 3808594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 4008748 - 4008648
Alignment:
Q  185 caggatctagttaatttaaaagaggttagactctcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaata 284  Q
    |||||||||||||||||| ||||  |||||||||   ||||   || | |||||||||| || ||| ||||||||||||| |||||||||||||||||||    
T  4008748 caggatctagttaatttacaagaatttagactctttgattcacgatccttgaaggagttgccagacctttcaaaagctacaaatcttaaagtattgaata 4008649  T
Q  285 t 285  Q
    |    
T  4008648 t 4008648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 3808927 - 3808862
Alignment:
Q  18 agaatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaa 83  Q
    ||||||||||||||||| ||||||  ||||||  | |||||||||||||| |||||||||||||||    
T  3808927 agaatcttgttatattgaacttgtatgatagtaaaatggaaaagctttggcgtggagtgcaggtaa 3808862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 3934179 - 3934252
Alignment:
Q  18 agaatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaatat 91  Q
    ||||||||||||||||||||||||    ||||| | |||||||||| ||||||||||| ||||||| |||||||    
T  3934179 agaatcttgttatattggacttgtatcttagtcgaatggaaaagctatggtgtggagtacaggtaattgaatat 3934252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 4217525 - 4217452
Alignment:
Q  18 agaatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaatat 91  Q
    ||||||||||||||||| |||||    |||||  |||||||||||||||||||||||| ||||||| |||||||    
T  4217525 agaatcttgttatattgaacttgcgttatagtaaagtggaaaagctttggtgtggagtacaggtaattgaatat 4217452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 4008907 - 4008842
Alignment:
Q  18 agaatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaa 83  Q
    |||||||||||||||| |||||||||  ||| | ||| ||||||||||||| ||||||| ||||||    
T  4008907 agaatcttgttatatttgacttgtcatttagccaagtagaaaagctttggtatggagtgaaggtaa 4008842  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 4017565 - 4017510
Alignment:
Q  26 gttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggt 81  Q
    |||||||||||||||||| |||||| ||| |||||||| |||  ||||||||||||    
T  4017565 gttatattggacttgtcatatagtcgagttgaaaagctctggcatggagtgcaggt 4017510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 3964739 - 3964796
Alignment:
Q  26 gttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaa 83  Q
    |||||||||||||||||| |||||| ||| ||||| || |||  ||||||||||||||    
T  3964739 gttatattggacttgtcatatagtcgagttgaaaaactctggcatggagtgcaggtaa 3964796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 185 - 361
Target Start/End: Complemental strand, 13396701 - 13396521
Alignment:
Q  185 caggatctagttaatttaaaagaggttagactctcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaata 284  Q
    ||||||||||||||||||||| | |||| ||||| | |||| |||| ||||||||||||||| ||||||||||| || || |||||||| ||||||||||    
T  13396701 caggatctagttaatttaaaacaagttacactctgccattcaaaatacctgaaggagttaccagacttttcaaacgccacaaatcttaaggtattgaata 13396602  T
Q  285 tggcacattgtcataattt----gaaaagcgtccatccatctattttctctcttgacaagcttgtgcatttggacctaagt 361  Q
    ||  |   ||| |||  ||    || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13396601 tgagatggtgtaataggttgatcgacaagcgtccatccatcaattttctctcttgacaagcttgtgcatttggacctaagt 13396521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 13396866 - 13396796
Alignment:
Q  20 aatcttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaata 90  Q
    |||||||||||| ||| |||| || |||| || || |||||||||||||||||||| ||||||| ||||||    
T  13396866 aatcttgttatactgggcttgccatatagccttgtagaaaagctttggtgtggagtacaggtaattgaata 13396796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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