View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12277_low_4 (Length: 244)
Name: NF12277_low_4
Description: NF12277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12277_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 48596354 - 48596134
Alignment:
| Q |
18 |
ctagcagtagcagcatatgatgagtagtgatagtgatgattgggaggaagatagaaaggcagtgannnnnnnnnnnnnnnnnnnnnntattgagggatga |
117 |
Q |
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| T |
48596354 |
ctagcagtagcagcatatgatgagtagtgatagtgatgattgggaggaagatagaaaggcagtgaaggaggaggaggagga------tattgagggatga |
48596261 |
T |
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| Q |
118 |
ggtactggtggtgatgatgagagtactgagaatgagcccttggcctccaatctatgtacaacctgtgtctgtgcaattcagcacgtccacggtggaatga |
217 |
Q |
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| T |
48596260 |
ggtactggtggtgatgatgagagtactgagaatgagcccttggcctccaatctatgtacaacctgtgtctgtgcaattcagcacgtccacggtggaatga |
48596161 |
T |
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| Q |
218 |
tacaatgtcaccagcatcaagtttctt |
244 |
Q |
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| T |
48596160 |
tacaatgtcaccagcatcaagtttctt |
48596134 |
T |
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