View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12278_low_1 (Length: 338)
Name: NF12278_low_1
Description: NF12278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12278_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 28 - 328
Target Start/End: Original strand, 33413236 - 33413533
Alignment:
| Q |
28 |
catctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcacttcttttgaatggcaagcacatttttgtatatggtcatcactacttaca |
127 |
Q |
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| T |
33413236 |
catctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcacttcttttgaatggcaagcacatttttgtatatggtca---ctacttaca |
33413332 |
T |
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| Q |
128 |
gcattgtacctaggaccaactactcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttc |
227 |
Q |
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| T |
33413333 |
acattgtacctaagaccaactactcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttc |
33413432 |
T |
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| Q |
228 |
tatttattttagtgtgtgatcgaactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctat |
327 |
Q |
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| T |
33413433 |
tatttattttagtgtgtgatcgaactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctat |
33413532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 28 - 327
Target Start/End: Original strand, 33420376 - 33420677
Alignment:
| Q |
28 |
catctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcacttcttttgaa--tggcaagcacatttttgtatatggtcatcactactta |
125 |
Q |
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||||||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
33420376 |
catctccatctaaagaaaacattgttgatgaaatatatcatttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcg---ctactta |
33420472 |
T |
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| Q |
126 |
cagcattgtacctaggacc---aactactcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgttttt |
222 |
Q |
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| T |
33420473 |
catcattgtacctatgaccggaaactactcattgaaccttggagctgctgcaagtgtttgtggtgttgtcgtcggatcaatggctattgcacaagttttt |
33420572 |
T |
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| Q |
223 |
gcttctatttattttagtgtgtgatcgaactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatgg |
322 |
Q |
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|||||| ||||||| ||| |||| |||||| ||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||| | ||||||||||| |
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| T |
33420573 |
gcttctgtttatttcagtatgtggtcgaaccgatcgtgtctaagacttatcatattcagtgttattgttcatctaattgtaaacatcaagtatgcaatgg |
33420672 |
T |
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| Q |
323 |
cctat |
327 |
Q |
| |
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||||| |
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| T |
33420673 |
cctat |
33420677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 28 - 328
Target Start/End: Complemental strand, 28812310 - 28812008
Alignment:
| Q |
28 |
catctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcacttcttttgaa--tggcaagcacatttttgtatatggtcatcactactta |
125 |
Q |
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||||||||| ||||||||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
28812310 |
catctccatctgaagaaaacattgtcgatgaaagatatcatttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcaa---tactta |
28812214 |
T |
|
| Q |
126 |
cagcattgtacctaggac---caactactcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgttttt |
222 |
Q |
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|| | ||||||||| | | ||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| || ||||||| |||||| |
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| T |
28812213 |
catcgttgtacctacggctgacaattactcattgaaccttggagctgctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcacaggttttt |
28812114 |
T |
|
| Q |
223 |
gcttctatttattttagtgtgtgatcgaactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatgg |
322 |
Q |
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|||||| ||||||| |||| ||| |||||| ||| || |||||||||| ||||||||||| ||||||||||| | |||| |||||| ||||||||| ||| |
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| T |
28812113 |
gcttctgtttatttcagtgcgtggtcgaaccgatcgtatctaagacctctcatattcagtaccattgttcttatgattggaaacatcatgtatgcattgg |
28812014 |
T |
|
| Q |
323 |
cctatg |
328 |
Q |
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|||||| |
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| T |
28812013 |
cctatg |
28812008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 33491661 - 33491796
Alignment:
| Q |
28 |
catctccatatgaagaaaacattgttgatgaacgatatcctttcatgtcacttcttttgaa--tggcaagcacatttttgtatatggtcatcactactta |
125 |
Q |
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||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||| || ||||||||||||||||||||| |||||| ||| |
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| T |
33491661 |
catctccatctgaagaaaacattgttgatgaaagatatcatttcatgccacttcttttgaacctgacaagcacatttttgtatatgg---tcactattta |
33491757 |
T |
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| Q |
126 |
cagcattgtacctaggac---caactactcattgaacct |
161 |
Q |
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| T |
33491758 |
caacattgtacctaggaccgacaactactcattgaacct |
33491796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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