View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12279_low_3 (Length: 215)

Name: NF12279_low_3
Description: NF12279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12279_low_3
NF12279_low_3
[»] chr8 (2 HSPs)
chr8 (45-159)||(33802145-33802259)
chr8 (45-160)||(38686824-38686941)
[»] chr4 (2 HSPs)
chr4 (45-160)||(50710187-50710302)
chr4 (45-159)||(53664374-53664488)
[»] chr2 (1 HSPs)
chr2 (45-155)||(8536296-8536408)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 33802259 - 33802145
Alignment:
Q  45 tagatttttcaaaaaccattctctaaattttaagggcaaaatttcagaattaaaatgatgaacctaaatcattatacaaaaaatttcgttgggcatgagt 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33802259 tagatttttcaaaaaccattctctaaattttaagggcaaaatttcaaaattaaaatgatgaacctaaatcattatacaaaaaatttccttgggcatgagt 33802160  T
Q  145 ttctctccacagtca 159  Q
    |||||||||||||||    
T  33802159 ttctctccacagtca 33802145  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 38686941 - 38686824
Alignment:
Q  45 tagatttttcaaaaaccattctctaaattttaagggcaaaatttcagaattaaaatgatgaacctaaatcat--tatacaaaaaatttcgttgggcatga 142  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||| ||||||    
T  38686941 tagatttttcaaaaaccattctctaaattttaatggcaaaatttcagaattaaaatgatgaacctaaatcattatatacaaaaaatttccttgagcatga 38686842  T
Q  143 gtttctctccacagtcac 160  Q
    ||||||||||||||||||    
T  38686841 gtttctctccacagtcac 38686824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 50710302 - 50710187
Alignment:
Q  45 tagatttttcaaaaaccattctctaaattttaagggcaaaatttcagaattaaaatgatgaacctaaatcattatacaaaaaatttcgttgggcatgagt 144  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  50710302 tagatttttcaaaaaccattctctaaattttaatggcaaaatttcagaattaaaatgatgaacctaaatcattatacaaaaaatttccttgggcatgagt 50710203  T
Q  145 ttctctccacagtcac 160  Q
    ||||||||||| ||||    
T  50710202 ttctctccacaatcac 50710187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 53664374 - 53664488
Alignment:
Q  45 tagatttttcaaaaaccattctctaaattttaagggcaaaatttcagaattaaaatgatgaacctaaatcattatacaaaaaatttcgttgggcatgagt 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  53664374 tagatttttcaaaaaccattctctaaattttaagggcaaaatttcaaaattaaaatgatgaacctaaatcattatacaaaaaatttccttcggcatgagt 53664473  T
Q  145 ttctctccacagtca 159  Q
    |||||||||||||||    
T  53664474 ttctctccacagtca 53664488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 8536296 - 8536408
Alignment:
Q  45 tagatttttcaaaaaccattctctaaattttaagggcaaaatttcagaattaaaatgatgaacctaaatcat--tatacaaaaaatttcgttgggcatga 142  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||    
T  8536296 tagatttttcaaaaaccattctctaaattttaatggcaaaatttcagaattaaaatgatgaacctaaatcgttatatacaaaaaatttccttgggcatga 8536395  T
Q  143 gtttctctccaca 155  Q
    |||||||||||||    
T  8536396 gtttctctccaca 8536408  T

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