View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12280_high_1 (Length: 553)
Name: NF12280_high_1
Description: NF12280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12280_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 14 - 532
Target Start/End: Complemental strand, 46430337 - 46429799
Alignment:
| Q |
14 |
acctgtgtaagaggtttataaagtgttgtttgtgtcataaactaggcgatgtggaactaa--------------aacttgttccccttcagcaagctcaa |
99 |
Q |
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| T |
46430337 |
acctgtgtaagaggtatataaagtgttgtttgtgtcataaactaggcgatgtggaactaattgatgctaactaaaacttgttccccttcagcaagctcaa |
46430238 |
T |
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| Q |
100 |
tacataaacttttgcattaacatactatgctaattttattactggaatttgnnnnnnnnnnnnnnccatttggattcttccttacaattcaacaattagt |
199 |
Q |
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| T |
46430237 |
tacataaacttttgcattaacatactatgctaattttattactggaatttgtttttttattttt-ccatttggattcttccttacaattcaacaattagt |
46430139 |
T |
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| Q |
200 |
atcaaggttgatttcccatggcattgttctctcaagactgtccagcacatatatgatgctactgggtgagaaaacatgaaaagtgtatagacttgtgaca |
299 |
Q |
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| T |
46430138 |
atcaaggttgatttcccatggcattgttctctcaagactgtccagcacatatatgatgctactgggtgagaaaacatgaaaagtgtataaacttgtgaca |
46430039 |
T |
|
| Q |
300 |
ttggcatacaggtacagaagagactccgctattcgtttacatgtgatcctgagaatgagaa-------nnnnnnngtgcaaaataacttgtagatgagaa |
392 |
Q |
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| T |
46430038 |
ttggcatacaggtacagaagagactccgctattcgtttacatgtgatcctgagaatgagaatgagaatattttttgtgcaaaataacttgtagatgagaa |
46429939 |
T |
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| Q |
393 |
ttttcctcagttgattgtttggtctaaggaaaatgagaaaaacaagcatatgaagtttatgaacagttgaaggtaataataagttgtttagtgtcatctt |
492 |
Q |
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| T |
46429938 |
ttttcctcagttgattgtttggtctaaggaaaatgagaaaaacaagcatatgaagtttatgaacagttgaaggtaataataagttgtttagtgtcatctt |
46429839 |
T |
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| Q |
493 |
cttaatgttcaatcagagttccattgtaatttgtttgatc |
532 |
Q |
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| T |
46429838 |
cttaatgttcaatcagagttccattgtaatttgtttgatc |
46429799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 501
Target Start/End: Complemental strand, 46434745 - 46434651
Alignment:
| Q |
399 |
tcagttgattgtttggtctaaggaaaatgagaaaaacaagcatatgaagtttatgaacagttgaaggtaataataagttgtttagtgtcatcttcttaat |
498 |
Q |
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| T |
46434745 |
tcagttgattgctttgtcgaggaaaaataagaaaaacaagcatat------tatga-cagttgaaggtactaataagtagtttagtgt-atcttcttaat |
46434654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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