View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12280_high_2 (Length: 478)

Name: NF12280_high_2
Description: NF12280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12280_high_2
NF12280_high_2
[»] chr5 (7 HSPs)
chr5 (1-413)||(2630745-2631159)
chr5 (411-468)||(2628993-2629050)
chr5 (281-385)||(19824597-19824701)
chr5 (311-372)||(22029837-22029898)
chr5 (279-347)||(31882582-31882650)
chr5 (289-352)||(42321081-42321144)
chr5 (278-348)||(18267865-18267935)
[»] chr2 (4 HSPs)
chr2 (281-391)||(32832561-32832671)
chr2 (283-351)||(41069681-41069749)
chr2 (281-379)||(36562723-36562818)
chr2 (281-351)||(11226159-11226229)
[»] chr6 (3 HSPs)
chr6 (230-372)||(3037361-3037503)
chr6 (281-372)||(6139331-6139421)
chr6 (310-351)||(457691-457732)
[»] chr7 (6 HSPs)
chr7 (260-379)||(33884023-33884144)
chr7 (281-372)||(37685177-37685266)
chr7 (272-379)||(11369034-11369144)
chr7 (284-367)||(22815801-22815883)
chr7 (281-351)||(42971651-42971721)
chr7 (281-346)||(7352757-7352822)
[»] chr4 (6 HSPs)
chr4 (283-377)||(51853481-51853575)
chr4 (279-348)||(30643603-30643672)
chr4 (292-372)||(23332129-23332209)
chr4 (283-351)||(46079348-46079416)
chr4 (279-351)||(50041822-50041894)
chr4 (279-351)||(50049044-50049116)
[»] chr1 (6 HSPs)
chr1 (310-396)||(17923868-17923954)
chr1 (278-373)||(19431376-19431471)
chr1 (281-385)||(5997444-5997546)
chr1 (283-376)||(24671171-24671264)
chr1 (281-351)||(48914993-48915063)
chr1 (281-351)||(48915384-48915454)
[»] chr3 (5 HSPs)
chr3 (281-372)||(39485457-39485550)
chr3 (333-391)||(51447655-51447713)
chr3 (281-351)||(10688621-10688691)
chr3 (312-370)||(24581522-24581579)
chr3 (283-351)||(46348400-46348468)
[»] chr8 (2 HSPs)
chr8 (314-382)||(14847452-14847520)
chr8 (279-351)||(44132881-44132953)


Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 2631159 - 2630745
Alignment:
Q  1 gcccatggaagttaatttgatttaaacagtttcatgataacaacttcgcgggagtttggagtagatcgattaggtgcatgtcatatgcaatcaacaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  2631159 gcccatggaagttaatttgatttaaacagtttcatgataacaacttcgcgggagtttggagttgatcgattagatgcatgtcatatgcaatcaacaaatc 2631060  T
Q  101 gaattcagcattatatttataatgttagctttatccatttggctctgaaaggatctttaagaaacgaatggttgaatattgactcaaatttgatgggcga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2631059 gaattcagcattatatttataatgttagctttatccatttggctctgaaaggatctttaagaaacgaatggttgaatattgactcaaatttgatgggcga 2630960  T
Q  201 agtgctgccaaaatcgtggttagcattttggtgtctttgccttcgatgcttttgagtgtctttgttaattcttgtt--catatctctcttaaccattcat 298  Q
    ||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  2630959 agtgctgccaaaatcgtggttagcacttcggtgtctttgtcttcgatgcttttgagtgtctttgttaattcttgtttatatatctctcttaaccattcat 2630860  T
Q  299 tctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcaccaaagacaaaggcattgaagcgtcatc 398  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2630859 tctctcacatctaaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcaccaaaggcaaaggcattgaagcgtcatc 2630760  T
Q  399 ccaaaatcgtggcat 413  Q
    ||||||| |||||||    
T  2630759 ccaaaattgtggcat 2630745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 2629050 - 2628993
Alignment:
Q  411 catcttatatgaccaaattgagaaaattttcagttgattttggcggaaatcacaggtt 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2629050 catcttatatgaccaaattgagaaaattttcagttgattttggcggaaatcacaggtt 2628993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 385
Target Start/End: Original strand, 19824597 - 19824701
Alignment:
Q  281 tctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcaccaaagacaa 380  Q
    ||||||| ||||||||||||||||  || |||||||||||| || |||||||||| |||||||||||||||  || || ||  ||||||||||||  |||    
T  19824597 tctctctaaaccattcattctctctcatctaaataatttattttaatcattcatctaacattctctctcatctaaaataaatcaaaggcaccaaaaccaa 19824696  T
Q  381 aggca 385  Q
    |||||    
T  19824697 aggca 19824701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 22029898 - 22029837
Alignment:
Q  311 aaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcacc 372  Q
    ||||||||||| || ||||||||||||||||||||||||||  || || |||||||| ||||    
T  22029898 aaataatttattttaatcattcatccaacattctctctcatctaaaataaactaaagacacc 22029837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 31882582 - 31882650
Alignment:
Q  279 tatctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctc 347  Q
    ||||||||| || |||||||||||||  || |||||||||||| || || ||||||| |||||||||||    
T  31882582 tatctctctaaatcattcattctctctcatctaaataatttattttaattattcatcaaacattctctc 31882650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 42321081 - 42321144
Alignment:
Q  289 aaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcata 352  Q
    ||||||||||||||||  || |||||||| ||| || | |||||||| ||||||||||||||||    
T  42321081 aaccattcattctctctcatctaaataatatattttaaacattcatctaacattctctctcata 42321144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 18267935 - 18267865
Alignment:
Q  278 atatctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctct 348  Q
    ||||||||||||| |||||||| |||  ||| |||||||||||| || || ||| ||||| ||||||||||    
T  18267935 atatctctcttaatcattcattatcttttatttaaataatttattttaattattaatccatcattctctct 18267865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 391
Target Start/End: Complemental strand, 32832671 - 32832561
Alignment:
Q  281 tctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcaccaaagacaa 380  Q
    ||||||||||||||||||||||||  || |||||||||||| || ||||||||||||||||||||||||||  || |||||| ||||||||||||| |||    
T  32832671 tctctcttaaccattcattctctctcatctaaataatttattttaatcattcatccaacattctctctcatctaaaatgaaccaaaggcaccaaagccaa 32832572  T
Q  381 aggcattgaag 391  Q
    ||||| |||||    
T  32832571 aggcactgaag 32832561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 41069749 - 41069681
Alignment:
Q  283 tctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcat 351  Q
    ||||||||| ||||||||||||  || |||||||||||| || ||||||||| || |||||||||||||    
T  41069749 tctcttaacaattcattctctctcatctaaataatttattttaatcattcattcatcattctctctcat 41069681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 379
Target Start/End: Complemental strand, 36562818 - 36562723
Alignment:
Q  281 tctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcaccaaagaca 379  Q
    |||||||||| |||||||||||||  || |||||||||||| ||  |||||||| || |||  |||||||||||| ||||||||| || ||||| ||||    
T  36562818 tctctcttaatcattcattctctctcatctaaataatttattttactcattcattcatcat--tctctcataaaa-atgaactaatggtaccaatgaca 36562723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 11226159 - 11226229
Alignment:
Q  281 tctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcat 351  Q
    ||||||||||| | ||||||||||  || |||||||||||| || ||||||||| |  |||||||||||||    
T  11226159 tctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcgtcattctctctcat 11226229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 230 - 372
Target Start/End: Complemental strand, 3037503 - 3037361
Alignment:
Q  230 ggtgtctttgccttcgatgcttttgagtgtctttgttaattcttgttcatatctctcttaaccattcattctctcatatataaataatttatgtttatca 329  Q
    |||| ||||||||||||||| ||||  || ||||||||||| |||||  |||||||||||||||||||||||||   || |||| ||||||| || ||||    
T  3037503 ggtgcctttgccttcgatgcctttggatgcctttgttaatttttgtttctatctctcttaaccattcattctctttcatctaaaaaatttattttaatca 3037404  T
Q  330 ttcatccaacattctctctcataaaagatgaactaaaggcacc 372  Q
    ||||||||||||| |||||||| ||| | |||| |||||||||    
T  3037403 ttcatccaacattttctctcatcaaaaaagaaccaaaggcacc 3037361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 372
Target Start/End: Original strand, 6139331 - 6139421
Alignment:
Q  281 tctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcacc 372  Q
    ||||| ||||||||||||||||||  || |||||||||||| || ||||||  || |||||||||||||||  || ||||| ||||||||||    
T  6139331 tctcttttaaccattcattctctctcatctaaataatttattttaatcatttgtctaacattctctctcatttaa-atgaattaaaggcacc 6139421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 457691 - 457732
Alignment:
Q  310 taaataatttatgtttatcattcatccaacattctctctcat 351  Q
    |||||||||||| || |||||||||||| |||||||||||||    
T  457691 taaataatttattttaatcattcatccatcattctctctcat 457732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 260 - 379
Target Start/End: Complemental strand, 33884144 - 33884023
Alignment:
Q  260 ctttgttaattcttgttc--atatctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaaga 357  Q
    ||||||||||| ||||||  |||| ||||| ||||||||||||||||  || |||||||||||| || || || |||||| ||||||||||||||||| |    
T  33884144 ctttgttaatttttgttcctatatatctctcaaccattcattctctctcatctaaataatttattttaattatccatccaccattctctctcataaaaaa 33884045  T
Q  358 tgaactaaaggcaccaaagaca 379  Q
    ||||| ||||  ||||||||||    
T  33884044 tgaacgaaagataccaaagaca 33884023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 37685266 - 37685177
Alignment:
Q  281 tctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcacc 372  Q
    |||||||||||||||||||||||||| ||  |||||||||| || |||||||||||||||||||||||| |  || |||||| |||||||||    
T  37685266 tctctcttaaccattcattctctcatcta--aataatttattttaatcattcatccaacattctctctcgtctaaaatgaaccaaaggcacc 37685177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 379
Target Start/End: Complemental strand, 11369144 - 11369034
Alignment:
Q  272 ttgttcatatct--ctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggc 369  Q
    ||||||||||||  |||||||||||| ||| ||||   | |||||||||||| || |||||| |||||||||||||||||||  || ||||| |||||||    
T  11369144 ttgttcatatctctctcttaaccatttattttctctcgtctaaataatttattttaatcatttatccaacattctctctcatctaaaatgaattaaaggc 11369045  T
Q  370 ac-caaagaca 379  Q
    || ||||||||    
T  11369044 actcaaagaca 11369034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 367
Target Start/End: Complemental strand, 22815883 - 22815801
Alignment:
Q  284 ctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaag 367  Q
    |||||||||||||||||||||  || ||| |||||||| || |||||| ||||| ||||||||||| || || |||||||||||    
T  22815883 ctcttaaccattcattctctctaatctaa-taatttattttaatcattgatccatcattctctctcgtagaaaatgaactaaag 22815801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 351
Target Start/End: Complemental strand, 42971721 - 42971651
Alignment:
Q  281 tctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcat 351  Q
    ||||||||||||||  ||||||||  || |||||||||||| || |||||||  |||||||||||||||||    
T  42971721 tctctcttaaccatcaattctctctcatctaaataatttattttaatcattcgcccaacattctctctcat 42971651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 7352757 - 7352822
Alignment:
Q  281 tctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctct 346  Q
    |||||||| |||||||||| |||  ||| |||||||||||| || ||||||||| |||||||||||    
T  7352757 tctctcttcaccattcattttcttttatttaaataatttattttaatcattcattcaacattctct 7352822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 283 - 377
Target Start/End: Original strand, 51853481 - 51853575
Alignment:
Q  283 tctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcaccaaaga 377  Q
    ||||||||||||||||| ||||  || ||||||| |||| || || |||||| |||||||||||||||||||| |||||||||||||||| ||||    
T  51853481 tctcttaaccattcattttctctcatctaaataagttattttaattattcattcaacattctctctcataaaaaatgaactaaaggcaccgaaga 51853575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 30643672 - 30643603
Alignment:
Q  279 tatctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctct 348  Q
    |||||||||||| || ||||||||||  || |||||||||||| || |||||||||||| |||| |||||    
T  30643672 tatctctcttaatcaatcattctctctcatctaaataatttattttaatcattcatccatcattatctct 30643603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 23332129 - 23332209
Alignment:
Q  292 cattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcacc 372  Q
    |||||||||||||  || |||||||  ||| || |||||||||| |||||||||||||||  || ||||||||||| ||||    
T  23332129 cattcattctctctcatttaaataacatattttaatcattcatctaacattctctctcatctaaaatgaactaaagacacc 23332209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 46079416 - 46079348
Alignment:
Q  283 tctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcat 351  Q
    ||||||||| | ||||||||||  || |||||||||||| || |||||||||  | |||||||||||||    
T  46079416 tctcttaacaactcattctctctcatctaaataatttattttaatcattcattgatcattctctctcat 46079348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 351
Target Start/End: Complemental strand, 50041894 - 50041822
Alignment:
Q  279 tatctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcat 351  Q
    ||||||||||||||| | ||||||||  ||  ||||||||||| || |||||||||| | |||| ||||||||    
T  50041894 tatctctcttaaccaataattctctctcatcaaaataatttattttaatcattcatctatcattatctctcat 50041822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 351
Target Start/End: Complemental strand, 50049116 - 50049044
Alignment:
Q  279 tatctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcat 351  Q
    ||||||||||||||| | ||||||||  ||  ||||||||||| || |||||||||| | |||| ||||||||    
T  50049116 tatctctcttaaccaataattctctctcatcaaaataatttattttaatcattcatctatcattatctctcat 50049044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 310 - 396
Target Start/End: Original strand, 17923868 - 17923954
Alignment:
Q  310 taaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcaccaaagacaaaggcattgaagcgtca 396  Q
    |||||||||||| || || ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| ||||    
T  17923868 taaataatttattttaattattcatccaacattctctctcataaaaaatgaactaaagacaccaaaggcaaagacactgaagtgtca 17923954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 278 - 373
Target Start/End: Complemental strand, 19431471 - 19431376
Alignment:
Q  278 atatctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcacca 373  Q
    |||||||||||||||| ||||||||||  || |||||||||||| || |||||||||||| |||||| ||||||  || ||  |||||||||||||    
T  19431471 atatctctcttaaccaatcattctctctcatctaaataatttattttaatcattcatccatcattctgtctcatctaaaatacactaaaggcacca 19431376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 385
Target Start/End: Original strand, 5997444 - 5997546
Alignment:
Q  281 tctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcaccaaagacaa 380  Q
    ||||||||||| |||||||| ||   || |||||||||| | |||||||||||||||||||  |||||||| ||| |||||||||||||||| |||  ||    
T  5997444 tctctcttaactattcattcactataatttaaataatttctttttatcattcatccaacat--tctctcatcaaaaatgaactaaaggcaccgaaggtaa 5997541  T
Q  381 aggca 385  Q
    |||||    
T  5997542 aggca 5997546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 376
Target Start/End: Original strand, 24671171 - 24671264
Alignment:
Q  283 tctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcaccaaag 376  Q
    ||||||||||| ||||||||||  || |||||||||||| || ||||||||| || || ||||||||||  || |||||  || ||||||||||    
T  24671171 tctcttaaccactcattctctctcatttaaataatttattttaatcattcattcatcactctctctcatctaaaatgaatcaatggcaccaaag 24671264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 351
Target Start/End: Complemental strand, 48915063 - 48914993
Alignment:
Q  281 tctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcat 351  Q
    ||||||||||| | ||||||||||  ||  ||||||||||| || ||||||||| || |||||||||||||    
T  48915063 tctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcat 48914993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 351
Target Start/End: Complemental strand, 48915454 - 48915384
Alignment:
Q  281 tctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcat 351  Q
    ||||||||||| | ||||||||||  ||  ||||||||||| || ||||||||| || |||||||||||||    
T  48915454 tctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcat 48915384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 39485550 - 39485457
Alignment:
Q  281 tctctcttaaccattcattctctcat--atataaataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcacc 372  Q
    ||||||| ||||||||||||||||    || |||||||||||| || |||||||||||||| |||||||||||  || ||||||||||||||||    
T  39485550 tctctctaaaccattcattctctctctcatctaaataatttattttaatcattcatccaaccttctctctcatctaaaatgaactaaaggcacc 39485457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 391
Target Start/End: Complemental strand, 51447713 - 51447655
Alignment:
Q  333 atccaacattctctctcataaaagatgaactaaaggcaccaaagacaaaggcattgaag 391  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||| ||||||||||||||    
T  51447713 atccaacattctctctcatcaaaaatgaactaaagacaccaaagccaaaggcattgaag 51447655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 10688621 - 10688691
Alignment:
Q  281 tctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcat 351  Q
    ||||||||||| | ||||||||||  || |||||||||||| || ||||||||| || |||||||||||||    
T  10688621 tctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcatcattctctctcat 10688691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 24581579 - 24581522
Alignment:
Q  312 aataatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggca 370  Q
    |||||||||| || ||||||||||||||||||||| |||| ||| ||||||||||||||    
T  24581579 aataatttattttaatcattcatccaacattctctttcatcaaa-atgaactaaaggca 24581522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 46348468 - 46348400
Alignment:
Q  283 tctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcat 351  Q
    |||||||| |||||||||||||  || |||||| ||||| || || |||||| || |||||||||||||    
T  46348468 tctcttaatcattcattctctctcatttaaatagtttatcttaataattcattcatcattctctctcat 46348400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 14847452 - 14847520
Alignment:
Q  314 taatttatgtttatcattcatccaacattctctctcataaaagatgaactaaaggcaccaaagacaaag 382  Q
    |||||||| || |||||||| |||||||||||||||||  ||  ||||||||| ||||||||| |||||    
T  14847452 taatttattttaatcattcacccaacattctctctcatctaaactgaactaaaagcaccaaagtcaaag 14847520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 351
Target Start/End: Complemental strand, 44132953 - 44132881
Alignment:
Q  279 tatctctcttaaccattcattctctcatatataaataatttatgtttatcattcatccaacattctctctcat 351  Q
    ||||||||||||||| | ||||||||  ||  ||||||||||| || |||||||||| | |||| ||||||||    
T  44132953 tatctctcttaaccaataattctctctcatcaaaataatttattttaatcattcatctatcattatctctcat 44132881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University