View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12280_high_3 (Length: 446)
Name: NF12280_high_3
Description: NF12280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12280_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 34915683 - 34915254
Alignment:
| Q |
1 |
tccggtttttggaaatactggtattgggcagtcgggatttggagaactacttgaaaaacttgaggccataacagccaggttacagacattgtttagtcaa |
100 |
Q |
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| T |
34915683 |
tccggtttttggaaatactggtattgggcagtcgggatttggagaactacttgaaaaacttgaggccataacagccaggttacagacattgtttagtcaa |
34915584 |
T |
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| Q |
101 |
ccttgagtagctagttactca-ctacaactgaactgatgtagatagatagatagatatatttccttttaaatttttgcttatttcaagtgacagtgggga |
199 |
Q |
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| T |
34915583 |
ccttgagtagctagttactcagctacaactgaactgatgtagatagatagatagatatatttccttttaaatttttgcttatttcaagtgacagtgggga |
34915484 |
T |
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| Q |
200 |
tggaaagcttcaaagtgtctatttgcctgcctgtgaaattttgaaaggcaaagctaccagctgttattatcgattttggttcatatgttgcccaattttt |
299 |
Q |
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| T |
34915483 |
tggaaagcttcaaagtgtctatttgcctgcctgtgaaattctgaaaggcaaagctaccagctgttattatcgattttggttcatatgttgcccaattttt |
34915384 |
T |
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| Q |
300 |
attgttgaatttcttgcacagtttgaaacaacgtcatcaatgaggtgcatgtttcttgatactaggtgtatgtttaaatttatcagtgtccaatattttc |
399 |
Q |
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| T |
34915383 |
attgttgaatttcttgcacagtttgaaacaacgtcatcaatgaggtgcatgtttcttgatactaggtgtatgtttaaatttatcagtgtccaatattttc |
34915284 |
T |
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| Q |
400 |
tgtttttattttcaagaacatgagttcact |
429 |
Q |
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| T |
34915283 |
tgtttttatattcaagaacatgagttcact |
34915254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 289
Target Start/End: Complemental strand, 34920487 - 34920353
Alignment:
| Q |
157 |
tatttccttttaaattttt-gcttatttcaagtgacagtgg--ggatggaaagcttcaaagtgtctatttgcctgcctg-tgaaattttgaaaggcaaag |
252 |
Q |
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| T |
34920487 |
tatttccctttaaattttttgcttatttaaagtgacagtgtttggatggaaagtttcaaagtcact--ttggttgcctcatgaaattctgaaaggcaagg |
34920390 |
T |
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| Q |
253 |
ctaccagctgttattatcgattttggttcatatgttg |
289 |
Q |
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| T |
34920389 |
ctaccggccattattattgattttggttcaaatgttg |
34920353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34909461 - 34909418
Alignment:
| Q |
1 |
tccggtttttggaaatactggtattgggcagtcgggatttggag |
44 |
Q |
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| T |
34909461 |
tccgggttttggaaatgctgatattgggcagtcgggatttggag |
34909418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 34895541 - 34895505
Alignment:
| Q |
8 |
tttggaaatactggtattgggcagtcgggatttggag |
44 |
Q |
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| T |
34895541 |
tttggaagtactggtattgggcagtcaggatttggag |
34895505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 34906050 - 34906014
Alignment:
| Q |
8 |
tttggaaatactggtattgggcagtcgggatttggag |
44 |
Q |
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||||||| |||||||||||||||||| |||||||||| |
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| T |
34906050 |
tttggaagtactggtattgggcagtcaggatttggag |
34906014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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