View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12280_high_9 (Length: 267)
Name: NF12280_high_9
Description: NF12280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12280_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 33443678 - 33443441
Alignment:
| Q |
19 |
aattttagtcaaataccaccaatgcaacctagattgttgtcgaactgttgttttagctacataaaaaaccaatatatcctaacctagattgtgaccgtag |
118 |
Q |
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| T |
33443678 |
aattgtagtcaaatacc--caatgcaacctagattgttgtcgaactgttgttttagctacataaaaaaccaatatatcctaacctagattgtgaccgtag |
33443581 |
T |
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| Q |
119 |
acttttattaagaacgctgcgctcgttctctatctaatagttgtgatttttaataacaggctacttatgaaaacttcgaagattggtgtaaggaatataa |
218 |
Q |
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| T |
33443580 |
acttttattaagaacgctgcgctcgttctctatctaatagttgtgatcgttaataacaggctacttatgaaaactttgaagattggtgtaaggaatataa |
33443481 |
T |
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| Q |
219 |
cagaacatactcttcagagaaagagaagcaccacaggttc |
258 |
Q |
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| T |
33443480 |
cagaacatactcttcagagaaagagaagcactacaggttc |
33443441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 8578222 - 8578303
Alignment:
| Q |
161 |
gtgatttttaataacaggctacttatgaaaacttcgaagattggtgtaaggaatataacagaacatactcttcagagaaaga |
242 |
Q |
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| T |
8578222 |
gtgatttttaataataggctacttatgaaaactttgaagattggtgtgaggaatataatagattatactcttcggagaaaga |
8578303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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