View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12280_low_5 (Length: 385)
Name: NF12280_low_5
Description: NF12280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12280_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 218 - 367
Target Start/End: Complemental strand, 24040828 - 24040679
Alignment:
| Q |
218 |
tttcaaacctttgcaagcaaatggaacaaccatgtcaccctacctacaacccttaaatcctcctccgagagagaatcatacgtaaaccaggtcgagtaga |
317 |
Q |
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| T |
24040828 |
tttcaaacctttgcaagcaaatggaacaaccatgccaccctacctacaacccttaaatcctcctccgagagagaatcatacgtaaaccaggtcgagtaga |
24040729 |
T |
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| Q |
318 |
ctacatctgaagcaaacttccaagaccaataatcaacccccaattgacaa |
367 |
Q |
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| T |
24040728 |
ctgcatctgaagcaaacttccaagaccaataatcaacccccaattgacaa |
24040679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 24040986 - 24040899
Alignment:
| Q |
126 |
tgcctccatccttgtgcccaaactaaggaaataattaaccaagtcaacgccaccaaagagattaagacacaagaaattagcagaaaaa |
213 |
Q |
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| T |
24040986 |
tgcctccatccttgtgcccaaactaaggaaataattaaccaagtcaacgccaccaaagagattaagacacaagaaattagcagaaaaa |
24040899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 24041099 - 24041061
Alignment:
| Q |
13 |
cacagatagatggaacaccaatggtgaccaaaagatccc |
51 |
Q |
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| T |
24041099 |
cacagatagatggaacaccaatggtgaccaaaagatccc |
24041061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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