View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12280_low_6 (Length: 355)
Name: NF12280_low_6
Description: NF12280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12280_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 339
Target Start/End: Complemental strand, 36603109 - 36602790
Alignment:
| Q |
20 |
ctgtacaagaagtacaaggggaatatgaaaaggtaagaaagcattattaatctgtggtgtgcattagtcatttttgtaagaggctttgaatgtgttatct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36603109 |
ctgtacaagaagtacaaggggaatatgaaaaggtaagaaagcattattaatttgtggtgtgcattagtcatttttgtaagaggctttgaatgtgttatct |
36603010 |
T |
|
| Q |
120 |
gaagtaaattctctttgcagacttttttgttcaatgctttgttcagatgctaaacttgactcacaccgattcaaggacattcttgacgaggctatagctg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36603009 |
gaagtaaattctctttgcagacttttttgttcaatgctttgttcagatgctaaacttgactcacaccgattcaaggacattcttgacgaggctatagctg |
36602910 |
T |
|
| Q |
220 |
ctggtaagggacattaactagattttgctgaccatggtttagtcagatatttggtctgggtcttagtttctacgcaggagaaaatatatgttgaatttta |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
36602909 |
ctggtaagggacattaactagattttgctgaccatggtttagtcagatatttggtctgggtcttagtttctacgcaggagaaaatatgtgttgaatctta |
36602810 |
T |
|
| Q |
320 |
tctgttagactagaagagca |
339 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36602809 |
tctgttagactagaagagca |
36602790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 20992302 - 20992402
Alignment:
| Q |
127 |
attctctttgcagacttttttgttcaatgctttgttcagatgctaaacttgactcacaccgattcaaggacattcttgacgaggctatagctgctggtaa |
226 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||||| ||| ||||||| ||||| |||||||||||||| ||| |||| |||||||||||| ||||||| |
|
|
| T |
20992302 |
attccctttgcaggttattttgttcaatgctttgttcggatcctaaactcgactcgcaccgattcaaggatattattgatgaggctatagcttctggtaa |
20992401 |
T |
|
| Q |
227 |
g |
227 |
Q |
| |
|
| |
|
|
| T |
20992402 |
g |
20992402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University