View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12280_low_7 (Length: 331)
Name: NF12280_low_7
Description: NF12280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12280_low_7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 43552667 - 43552980
Alignment:
| Q |
18 |
caactagcatcacactaagaccaatgaagattgtgcctagggagccaccaccaagtgctagtagcaaaacagatagccactgcatcccttgattatgtgg |
117 |
Q |
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| T |
43552667 |
caactagcatcacactaagaccaatgaatattgtgcctagggagccaccaccaagtgctagtagcaaaacagatagccactgcatcccttgattatgtgg |
43552766 |
T |
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| Q |
118 |
caaaatcacccatgtggctgcaacatagccagttgccatgaaggccacagctacccacataaccttgtgagcaatgatcaacaataatgtttgtggtttt |
217 |
Q |
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| T |
43552767 |
caaaatcacccatgtggctgcaacatagccagttgccatgaaggccacagctacccacataaccttgtgagcaatgatcaacaataatgtttgtggtttt |
43552866 |
T |
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| Q |
218 |
cttctaaatggaacgatactaacaagaacaataactacagataaagaggtgaagagggctatgttattgctaatcgcaaataccttaaaagctgatgttc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43552867 |
cttctaaatggaacgatactaacaagaacaataactacagataaagaggtgaagagggctatgttattgcttatcgcaaataccttaaaagctgatgttc |
43552966 |
T |
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| Q |
318 |
taccaaccattgat |
331 |
Q |
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| T |
43552967 |
taccaaccattgat |
43552980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 43548669 - 43548982
Alignment:
| Q |
18 |
caactagcatcacactaagaccaatgaagattgtgcctagggagccaccaccaagtgctagtagcaaaacagatagccactgcatcccttgattatgtgg |
117 |
Q |
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|||| |||||||||||||||| |||||| || |||||||| ||||||| |||||||||||||||| |||||||||||| |||||| ||||||||||||| |
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| T |
43548669 |
caacaagcatcacactaagactaatgaatatcgtgcctagaaagccaccgccaagtgctagtagcacaacagatagccattgcatctcttgattatgtgg |
43548768 |
T |
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| Q |
118 |
caaaatcacccatgtggctgcaacatagccagttgccatgaaggccacagctacccacataaccttgtgagcaatgatcaacaataatgtttgtggtttt |
217 |
Q |
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| T |
43548769 |
caaaatcacccatgtagctgcaacataaccagttcccataaatgccacagcaacccacataaccttgtgagcaatggtcaatagtattgtttgtggtttt |
43548868 |
T |
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| Q |
218 |
cttctaaatggaacgatactaacaagaacaataactacagataaagaggtgaagagggctatgttattgctaatcgcaaataccttaaaagctgatgttc |
317 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||| ||||||| || |||||||||||||||||||||||| |
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| T |
43548869 |
cttctaaatggaatgatactaacaagaacaataaccacagataaagaggtaaagagtgctatgatattgcttattgcaaataccttaaaagctgatgttt |
43548968 |
T |
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| Q |
318 |
taccaaccattgat |
331 |
Q |
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|||| |||||||| |
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| T |
43548969 |
caccagccattgat |
43548982 |
T |
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