View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12280_low_8 (Length: 286)
Name: NF12280_low_8
Description: NF12280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12280_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 89 - 279
Target Start/End: Original strand, 28579271 - 28579461
Alignment:
| Q |
89 |
ctgtgagtattgtaagttggtccaatgtcccgtgaacatcgaaaagatcatcaataacataaattaaagagataggtttggtgagttcaattctttgttc |
188 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28579271 |
ctgtgagtattgtaagttggtccaatgtcccgtgaacatcgaaaaggtcatcaataacataaattaaagagataggtttggtgagttcaaccctttgttc |
28579370 |
T |
|
| Q |
189 |
tgaaaagtttggatctgtaaagcatgccataggccatgtgtaccatttgagaggttgataccccgaaaacttcacctcctttgctactcca |
279 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| |
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| T |
28579371 |
tgaaaagtttggatctgtaaagcatgccatgggccatgtgtaccatttgagaggttgatacccagaaaacttcacctccttggctagtcca |
28579461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 89 - 279
Target Start/End: Original strand, 28585419 - 28585609
Alignment:
| Q |
89 |
ctgtgagtattgtaagttggtccaatgtcccgtgaacatcgaaaagatcatcaataacataaattaaagagataggtttggtgagttcaattctttgttc |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
28585419 |
ctgtgagtattgtaagttggtccaatgtcccgtgaacatcgaaaaggtcatcaataacataaattaaggagataggtttggtgagttcaaccctttgttc |
28585518 |
T |
|
| Q |
189 |
tgaaaagtttggatctgtaaagcatgccataggccatgtgtaccatttgagaggttgataccccgaaaacttcacctcctttgctactcca |
279 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
28585519 |
tgaaaagtttggatctgtaaagcatgccatgggccatgtgtaccatttgagaggttgataccccgaaaacttcacctccttggctagtcca |
28585609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 89 - 269
Target Start/End: Original strand, 28567392 - 28567572
Alignment:
| Q |
89 |
ctgtgagtattgtaagttggtccaatgtcccgtgaacatcgaaaagatcatcaataacataaattaaagagataggtttggtgagttcaattctttgttc |
188 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |
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| T |
28567392 |
ctgtgaatattgtaagttgatccaatgtcccgtgaacatcgaaaatgtcgtcaataacataaattaaagagatgggttttgtgagctcaatcctttgttc |
28567491 |
T |
|
| Q |
189 |
tgaaaagtttggatctgtaaagcatgccataggccatgtgtaccatttgagaggttgataccccgaaaacttcacctcctt |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
28567492 |
tgaaaagtttggatctgtaaagcatgccataggccatgtgtaccatttcagaggttgataccctgaaaacttcacctcctt |
28567572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 97 - 274
Target Start/End: Original strand, 26315282 - 26315459
Alignment:
| Q |
97 |
attgtaagttggtccaatgtcccgtgaacatcgaaaagatcatcaataacataaattaaagagataggtttggtgagttcaattctttgttctgaaaagt |
196 |
Q |
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|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
26315282 |
attgtaagttgatccaatgtcccgtgaacatcgaaaatgtcatcaataacataaattaaagagataggttttgtgagctcaatcctttgttctgaaaagt |
26315381 |
T |
|
| Q |
197 |
ttggatctgtaaagcatgccataggccatgtgtaccatttgagaggttgataccccgaaaacttcacctcctttgcta |
274 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| |||| |
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| T |
26315382 |
ttggatctgtaaagcatgccatgggccatgtgtaccatttcagaggttgatatcctgaaaacttcacctccttggcta |
26315459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 279
Target Start/End: Original strand, 28574220 - 28574410
Alignment:
| Q |
89 |
ctgtgagtattgtaagttggtccaatgtcccgtgaacatcgaaaagatcatcaataacataaattaaagagataggtttggtgagttcaattctttgttc |
188 |
Q |
| |
|
|||||| |||||||||||| ||||||||| ||||||| ||||||| |||||||| |||||||||| |||||||||||||||||| ||||| |||||||| |
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| T |
28574220 |
ctgtgaatattgtaagttgatccaatgtcgcgtgaacgtcgaaaatgtcatcaatgacataaattagagagataggtttggtgagctcaatcctttgttc |
28574319 |
T |
|
| Q |
189 |
tgaaaagtttggatctgtaaagcatgccataggccatgtgtaccatttgagaggttgataccccgaaaacttcacctcctttgctactcca |
279 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||| |||| |||| |
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| T |
28574320 |
tgaaaagtttggatctgtaaagcatgccatgggccatgtgtaccattttagaggttgatactctgaaaacttcacctccttggctagtcca |
28574410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 100 - 269
Target Start/End: Original strand, 20616584 - 20616753
Alignment:
| Q |
100 |
gtaagttggtccaatgtcccgtgaacatcgaaaagatcatcaataacataaattaaagagataggtttggtgagttcaattcttt-gttctgaaaagttt |
198 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| ||||||||||| ||||| || |||||| ||||||||||| |||| |||| |||| ||||| | |
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| T |
20616584 |
gtaagttgatccaatgttccgtgaacatcgaaaatatcatcaataatataaactagagagattggtttggtgagctcaaccctttcgttc-gaaaaacat |
20616682 |
T |
|
| Q |
199 |
ggatctgtaaagcatgccataggccatgtgtaccatttgagaggttgataccccgaaaacttcacctcctt |
269 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||| ||||| | ||| || | |||||||| |||||| |
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| T |
20616683 |
ggatctgtaaaacatgccatgggccacatgtaccatttcagagggttataacctgcaaacttcatctcctt |
20616753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 279
Target Start/End: Original strand, 24070834 - 24071024
Alignment:
| Q |
89 |
ctgtgagtattgtaagttggtccaatgtcccgtgaacatcgaaaagatcatcaataacataaattaaagagataggtttggtgagttcaattctttgttc |
188 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||| ||||| |||||||| |
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| T |
24070834 |
ctgtgaatattgtaagttgatccaatgtcccgtgaacatcgaaaatgtcgtcaataacataaatcaaagagatgggttttgtgagctcaatcctttgttc |
24070933 |
T |
|
| Q |
189 |
tgaaaagtttggatctgtaaagcatgccataggccatgtgtaccatttgagaggttgataccccgaaaacttcacctcctttgctactcca |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||| |||| |||| |
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| T |
24070934 |
tgaaaagtttggatctgtaaagcatgccatgggccatgtgtaccatttcagaggttgatactctgaaaacttcacctccttggctagtcca |
24071024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 279
Target Start/End: Complemental strand, 24079902 - 24079712
Alignment:
| Q |
89 |
ctgtgagtattgtaagttggtccaatgtcccgtgaacatcgaaaagatcatcaataacataaattaaagagataggtttggtgagttcaattctttgttc |
188 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||| ||||| |||||||| |
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| T |
24079902 |
ctgtgaatattgtaagttgatccaatgtcccgtgaacatcgaaaatgtcgtcaataacataaatcaaagagatgggttttgtgagctcaatcctttgttc |
24079803 |
T |
|
| Q |
189 |
tgaaaagtttggatctgtaaagcatgccataggccatgtgtaccatttgagaggttgataccccgaaaacttcacctcctttgctactcca |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||| |||| |||| |
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| T |
24079802 |
tgaaaagtttggatctgtaaagcatgccatgggccatgtgtaccatttcagaggttgatactctgaaaacttcacctccttggctagtcca |
24079712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 248
Target Start/End: Complemental strand, 2602071 - 2601923
Alignment:
| Q |
100 |
gtaagttggtccaatgtcccgtgaacatcgaaaagatcatcaataacataaattaaagagataggtttggtgagttcaattctttgttctgaaaagtttg |
199 |
Q |
| |
|
||||| ||||| | |||||| | ||||||||||| |||||||||||||||| || ||||||| ||||||||| ||||| ||||| |||||||| ||| |
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|
| T |
2602071 |
gtaagctggtctagtgtcccataaacatcgaaaatgtcatcaataacataaactagagagataactttggtgagctcaatcctttggtctgaaaaacttg |
2601972 |
T |
|
| Q |
200 |
gatctgtaaagcatgccataggccatgtgtaccatttgagaggttgata |
248 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||||| || |||||||| |
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|
| T |
2601971 |
gatctgtaaagcataccatgggccacatgtaccatttcagtggttgata |
2601923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46430142 - 46430186
Alignment:
| Q |
1 |
aattgttgaattgaaaggaagaacccaaatggagaaatacaaaaa |
45 |
Q |
| |
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||||||||||||| ||||||||| ||||||||| ||||| ||||| |
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| T |
46430142 |
aattgttgaattgtaaggaagaatccaaatggaaaaataaaaaaa |
46430186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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