View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12280_low_9 (Length: 283)

Name: NF12280_low_9
Description: NF12280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12280_low_9
NF12280_low_9
[»] chr7 (2 HSPs)
chr7 (9-283)||(36602538-36602810)
chr7 (18-50)||(29907518-29907550)
[»] chr6 (3 HSPs)
chr6 (14-50)||(6808491-6808527)
chr6 (14-50)||(17432444-17432480)
chr6 (14-50)||(29355858-29355894)
[»] chr5 (3 HSPs)
chr5 (14-50)||(32354223-32354259)
chr5 (14-50)||(16957410-16957446)
chr5 (14-50)||(38879679-38879715)
[»] chr2 (7 HSPs)
chr2 (13-50)||(36871586-36871623)
chr2 (14-50)||(9671275-9671311)
chr2 (14-50)||(10543796-10543832)
chr2 (14-50)||(10546259-10546295)
chr2 (14-50)||(14530416-14530452)
chr2 (14-50)||(22371208-22371244)
chr2 (14-50)||(40579752-40579788)
[»] chr1 (3 HSPs)
chr1 (9-50)||(45402210-45402251)
chr1 (14-50)||(4349757-4349793)
chr1 (14-50)||(10668346-10668382)
[»] scaffold0057 (1 HSPs)
scaffold0057 (14-50)||(46927-46963)
[»] chr8 (4 HSPs)
chr8 (14-50)||(12625986-12626022)
chr8 (14-50)||(27468095-27468131)
chr8 (14-50)||(35261775-35261811)
chr8 (14-50)||(39460997-39461033)
[»] chr4 (8 HSPs)
chr4 (14-50)||(11394948-11394984)
chr4 (14-50)||(11404675-11404711)
chr4 (14-50)||(20639661-20639697)
chr4 (14-50)||(35532088-35532124)
chr4 (14-50)||(36816387-36816423)
chr4 (14-50)||(38755911-38755947)
chr4 (14-50)||(40553940-40553976)
chr4 (14-50)||(44363133-44363169)
[»] chr3 (9 HSPs)
chr3 (14-50)||(516530-516566)
chr3 (14-50)||(4495679-4495715)
chr3 (14-50)||(10484619-10484655)
chr3 (14-50)||(13628793-13628829)
chr3 (14-50)||(40272815-40272851)
chr3 (14-50)||(40390359-40390395)
chr3 (14-50)||(47624217-47624253)
chr3 (14-50)||(54032574-54032610)
chr3 (14-50)||(54484809-54484845)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 36602538 - 36602810
Alignment:
Q  9 cagaacctgtgtaggcgggagctttagtgcaccgggttgcccnnnnnnnnnatatcgttatctatgttaactggacatttatatattctctaacaagtat 108  Q
    |||| |||| ||| ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36602538 cagaccctgcgtatgcgggagctttagtgcaccgggttgccctttttttttatatcgttatctatgttaactggacatttatatattctctaacaagtat 36602637  T
Q  109 tgtgggtatttttggggaaaaagataaacattaacttcttcatttacttggtcttgatgattaggtctttctttcttagaaaaagaccaaaggaattaat 208  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36602638 tgtgagtatttttggggaaaaagataaacattaacttcttcatttacttggtcttgatgattaggtctttctttcttagaaaaagaccaaaggaattaat 36602737  T
Q  209 atgctgattctgtgctaaagcctaaaagcaaaataattgctaggtctcccactgtgctcttctagtctaacagat 283  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||    
T  36602738 atgctgattctgtgctaaagcctaaaagcaaaataactgctaggtctcccac--tgctcttctagtctaacagat 36602810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 29907518 - 29907550
Alignment:
Q  18 tgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||||||||||||||||||||||||||||    
T  29907518 tgtatgcgggagctttagtgcaccgggttgccc 29907550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 6808491 - 6808527
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||||||| ||||||||||||||||||||||||||||    
T  6808491 cctgtgtatgcgggagctttagtgcaccgggttgccc 6808527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 17432444 - 17432480
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||||| | ||||||||||||||||||||||||||||    
T  17432444 cctgtgcatgcgggagctttagtgcaccgggttgccc 17432480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 29355894 - 29355858
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  29355894 cctgcgtatgcgggagctttagtgcaccgggttgccc 29355858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 32354223 - 32354259
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32354223 cctgtgtatgcgggagctttagtgcaccgggttgccc 32354259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 16957410 - 16957446
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  16957410 cctgcgtatgcgggagctttagtgcaccgggttgccc 16957446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 38879679 - 38879715
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  38879679 cctgcgtatgcgggagctttagtgcaccgggttgccc 38879715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 36871586 - 36871623
Alignment:
Q  13 acctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  36871586 acctgcgtatgcgggagctttagtgcaccgggttgccc 36871623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 9671275 - 9671311
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  9671275 cctgcgtatgcgggagctttagtgcaccgggttgccc 9671311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 10543796 - 10543832
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  10543796 cctgcgtatgcgggagctttagtgcaccgggttgccc 10543832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 10546259 - 10546295
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  10546259 cctgcgtatgcgggagctttagtgcaccgggttgccc 10546295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 14530416 - 14530452
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  14530416 cctgcgtatgcgggagctttagtgcaccgggttgccc 14530452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 22371208 - 22371244
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  22371208 cctgcgtatgcgggagctttagtgcaccgggttgccc 22371244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 40579788 - 40579752
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  40579788 cctgagtatgcgggagctttagtgcaccgggttgccc 40579752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 45402210 - 45402251
Alignment:
Q  9 cagaacctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| |||| ||| ||||||||||||||||||||||||||||    
T  45402210 cagaccctgcgtatgcgggagctttagtgcaccgggttgccc 45402251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 4349757 - 4349793
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  4349757 cctgcgtatgcgggagctttagtgcaccgggttgccc 4349793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 10668346 - 10668382
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  10668346 cctgcgtatgcgggagctttagtgcaccgggttgccc 10668382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 46927 - 46963
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  46927 cctgcgtatgcgggagctttagtgcaccgggttgccc 46963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 12625986 - 12626022
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  12625986 cctgcgtatgcgggagctttagtgcaccgggttgccc 12626022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 27468131 - 27468095
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  27468131 cctgcgtatgcgggagctttagtgcaccgggttgccc 27468095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 35261775 - 35261811
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  35261775 cctgcgtatgcgggagctttagtgcaccgggttgccc 35261811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 39461033 - 39460997
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  39461033 cctgcgtatgcgggagctttagtgcaccgggttgccc 39460997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 11394948 - 11394984
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  11394948 cctgcgtatgcgggagctttagtgcaccgggttgccc 11394984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 11404675 - 11404711
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  11404675 cctgcgtatgcgggagctttagtgcaccgggttgccc 11404711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 20639697 - 20639661
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  20639697 cctgcgtatgcgggagctttagtgcaccgggttgccc 20639661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 35532088 - 35532124
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  35532088 cctgcgtatgcgggagctttagtgcaccgggttgccc 35532124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 36816423 - 36816387
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  36816423 cctgtgtatgcgggagctttagtgtaccgggttgccc 36816387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 38755947 - 38755911
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  38755947 cctgcgtatgcgggagctttagtgcaccgggttgccc 38755911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 40553976 - 40553940
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  40553976 cctgcgtatgcgggagctttagtgcaccgggttgccc 40553940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 44363169 - 44363133
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  44363169 cctgcgtatgcgggagctttagtgcaccgggttgccc 44363133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 516530 - 516566
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  516530 cctgcgtatgcgggagctttagtgcaccgggttgccc 516566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 4495715 - 4495679
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  4495715 cctgcgtatgcgggagctttagtgcaccgggttgccc 4495679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 10484655 - 10484619
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  10484655 cctgcgtatgcgggagctttagtgcaccgggttgccc 10484619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 13628829 - 13628793
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  13628829 cctgcgtatgcgggagctttagtgcaccgggttgccc 13628793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 40272851 - 40272815
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  40272851 cctgcgtatgcgggagctttagtgcaccgggttgccc 40272815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 40390359 - 40390395
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  40390359 cctgcgtatgcgggagctttagtgcaccgggttgccc 40390395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 47624217 - 47624253
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  47624217 cctgcgtatgcgggagctttagtgcaccgggttgccc 47624253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 54032610 - 54032574
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  54032610 cctgcgtatgcgggagctttagtgcaccgggttgccc 54032574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 54484809 - 54484845
Alignment:
Q  14 cctgtgtaggcgggagctttagtgcaccgggttgccc 50  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  54484809 cctgcgtatgcgggagctttagtgcaccgggttgccc 54484845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University