View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12281_low_1 (Length: 549)
Name: NF12281_low_1
Description: NF12281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12281_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Complemental strand, 3904535 - 3904015
Alignment:
| Q |
19 |
ggagcctaccaactctctctgctgattccctgcaatctagtgctcttgcaagaggttctgttgtggattattcccaggcacttactccattgcatcctta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3904535 |
ggagcctaccaactctctctgctgattccctgcaatctagtgctcttgcaagaggttctgttgtggattattcccaggcacttactccattgcatcctta |
3904436 |
T |
|
| Q |
119 |
tcagtctccatctccgagaaattttcttgggcatagcacatcttggatatcccaagcccctcttcgtggaccatggattggttctccaactcctgcgcct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3904435 |
ccagtctccatctccgagaaattttcttgggcatagcacatcttggatatcccaagcccctcttcgtggaccatggattggttctccaactcctgcgcct |
3904336 |
T |
|
| Q |
219 |
gacaacaacacccatctttctgcatcaccttcctcggatacaattaagttagcttcagttaagggatctttgcctccttcctcaagcataaaagatgtta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3904335 |
gacaacaacacccatctttctgcatcaccttcctcggatacaattaagttagcttcagttaagggatctttgcctccttcctcaagcataaaagatgtta |
3904236 |
T |
|
| Q |
319 |
ctcctggtcctcctgcctccagttcaggcttacaaagtacttttgttgggactgattcgcagcttgacgcaaacaacgtgacagtaccacctgctcagca |
418 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3904235 |
ctcctggtcctcctgcctccagttcaggcttacagagtacttttgttgggactgattcgcagcttgacgcaaacaacgtgacagtaccacctgctcagca |
3904136 |
T |
|
| Q |
419 |
atcttcaggtccgaaggccaaaaagcggaaaaaggatgtgctatctgaggatcatggtcagaagcttttccagtcgctgactccagccgtcgctagccgt |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3904135 |
atcttcaggtccgaaggccaaaaagcggaaaaaggatgtgctatctgaggatcatggtcagaagcttttgcagtcgctgactccagccgtcgctagccgt |
3904036 |
T |
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| Q |
519 |
gcatctacttctgtctctgct |
539 |
Q |
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|||||||||||||| |||||| |
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| T |
3904035 |
gcatctacttctgtttctgct |
3904015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 41591623 - 41591818
Alignment:
| Q |
19 |
ggagcctaccaactctctctgctgattccctgcaatctagtgctcttgcaagaggttctgttgtggattattcccaggcacttactccattgcatcctta |
118 |
Q |
| |
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|||| |||||||||| ||| ||||||||||||||||||||| |||||||||||| ||| | |||||||||| ||||| || ||| | ||||||||| | |
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| T |
41591623 |
ggagtctaccaactccctcatgtgattccctgcaatctagtgcccttgcaagaggtcctgctttggattattcacaggcgctcacttctttgcatcctaa |
41591722 |
T |
|
| Q |
119 |
tcagtctccatctccgagaaattttcttgggcatagcacatcttggatatcccaagcccctcttcgtggaccatggattggttctccaactcctgc |
214 |
Q |
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||| ||||| | | | |||| ||||||||||||| |||||| |||||||||| ||||||||||||||||||||| || |||| | |||||||| |
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| T |
41591723 |
tcaaactccaccactgcgaaactttcttgggcataatacatctcggatatcccagccccctcttcgtggaccatggactgcttcttctactcctgc |
41591818 |
T |
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