View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12282_low_1 (Length: 253)
Name: NF12282_low_1
Description: NF12282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12282_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 56469563 - 56469338
Alignment:
| Q |
18 |
tctttgtgtgtcatacttctcgaacttactaacaacctcctcatgctaccattggtcatgttagttctcctcatctcaaagtctgtggcagattgtttta |
117 |
Q |
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| T |
56469563 |
tctttgtgtgtcattcttctcgaacttactaacaacctcctcatgctaccattggtcatgttagttctcctcatctcaaagtctgtggcagattgtttta |
56469464 |
T |
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| Q |
118 |
acaaaggtgtttatgatcaaatagtggaaatgaaggggttgccttatttggaagtgcatgcagaaccgtacatgaggcatttagttgccggtgatgttgt |
217 |
Q |
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| T |
56469463 |
acaaaggtgtttatgatcaaatagtggaaatgaaggggttgccttatttggaagtgcatgcagaaccgtacatgaggcatttagttgccggtgatgttgt |
56469364 |
T |
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| Q |
218 |
ttctggtccactgtttacattctctg |
243 |
Q |
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| T |
56469363 |
ttctggtccactgtttacattctctg |
56469338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 24 - 233
Target Start/End: Original strand, 154997 - 155206
Alignment:
| Q |
24 |
tgtgtcatacttctcgaacttactaacaacctcctcatgctaccattggtcatgttagttctcctcatctcaaagtctgtggcagattgttttaacaaag |
123 |
Q |
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| T |
154997 |
tgtgtcatacttcttgaactcactaataacttgttgatgctaccattggtcatgttggttctcctcatttctaagacagtggctgattgttttaacaaag |
155096 |
T |
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| Q |
124 |
gtgtttatgatcaaatagtggaaatgaaggggttgccttatttggaagtgcatgcagaaccgtacatgaggcatttagttgccggtgatgttgtttctgg |
223 |
Q |
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| T |
155097 |
gtgtttatgatcagattgtggcgttgaagggactaccttatatggaagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtttctgg |
155196 |
T |
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| Q |
224 |
tccactgttt |
233 |
Q |
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| T |
155197 |
tccactgttt |
155206 |
T |
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