View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12282_low_2 (Length: 246)
Name: NF12282_low_2
Description: NF12282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12282_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 33511959 - 33512170
Alignment:
| Q |
17 |
gtggtaaagaaaagataatccaatctaatatcgactaggcatgtacaaacatgcacacattattaatctcacataagcatgttctcagcagttatagtcc |
116 |
Q |
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| T |
33511959 |
gtggtgaagaaaagataatccaatctaatatcgactaggcatgtacaaacatgcacacattattaatctcacataagcatgttctcagcagttatagtcc |
33512058 |
T |
|
| Q |
117 |
tagatttagagtttcttagataaattagtgtagagtaatcagttatatttctataagtttacgatgtttcatttattaaactaaatatttttacattcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33512059 |
tagatttagagtttcttagataaattagtgtagagtaatcagttatatttctataagtttacgatgtttcatttattaaactaaatatttttacattcca |
33512158 |
T |
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| Q |
217 |
ctcattcattat |
228 |
Q |
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|||||||||||| |
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| T |
33512159 |
ctcattcattat |
33512170 |
T |
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