View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12283_high_3 (Length: 271)
Name: NF12283_high_3
Description: NF12283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12283_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 31032057 - 31031934
Alignment:
| Q |
11 |
cctgtggacggaaaaggtttgcatgtggaggtggaaaaatgtggatatcgttgtgtatttaaacaggatctacaacagtttcactcaacaatgatgcacc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31032057 |
cctgtggacggaaaaggtttgcatgtggaggtggagaaatgtggatatcgttgtgtatttaaacaggatctacaacagtttcactcaacaatgatgcacc |
31031958 |
T |
|
| Q |
111 |
acaggaatttgtttgctaggaagc |
134 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
31031957 |
acaggaattcgtttgctaggaagc |
31031934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 31027091 - 31026847
Alignment:
| Q |
16 |
ggacggaaaaggtttgcatgtggaggtggaaaaatgtggatatcgttgtgtatttaaacaggatctacaacagtttcactcaacaatgatgcaccacagg |
115 |
Q |
| |
|
||||||||| || ||||||||||| ||| ||| |||||| ||||||| |||||| |||||||||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
31027091 |
ggacggaaacgggttgcatgtggatgtgaaaacatgtgggtatcgttatgtattcaaacaggatctaaaacagtttaactcaacagtgatgcaccacaga |
31026992 |
T |
|
| Q |
116 |
aatttgtttgctaggaagcgcaagtttttggcaattgaggattaggtacgaccgcagccacatcca-------caatgattcatctgattaaatagatca |
208 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||| |||||| | | ||| || ||| ||||| | ||||||||||||||||||||||||| |
|
|
| T |
31026991 |
aatccgtttgcacagaagcgcaagtttttggcaattgaagattagtttctaccacaaccatatccattatccgcgatgattcatctgattaaatagatca |
31026892 |
T |
|
| Q |
209 |
taagctgtagcgactgcatttcagctggacttccattcaactttg |
253 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||| ||||||||| |
|
|
| T |
31026891 |
taagctgtagcgatttcatttcagctgcacttccaatcaactttg |
31026847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 31031936 - 31031854
Alignment:
| Q |
171 |
agccacatccacaatgattcatctgattaaatagatcataagctgtagcgactgcatttcagctggacttccattcaactttg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31031936 |
agccacatccacaatgattcatctgattaaatagatcataagctgtagcaactgcatttcagctggacttccattcaactttg |
31031854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 31017035 - 31016876
Alignment:
| Q |
24 |
aaggtttgcatgtggaggtggaaaaatgtggatatcgttgtgtatttaaacaggatctacaacagtttcactcaacaatgatgcaccacaggaatttgtt |
123 |
Q |
| |
|
|||||||||||| ||||||| | |||||||| |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||| |||| | |
|
|
| T |
31017035 |
aaggtttgcatggggaggtgaagaaatgtgggtatcgttgcatatttaaacaggatcaacaacagtttaactcaacaatgatgcaccacagaaattcatc |
31016936 |
T |
|
| Q |
124 |
tgctaggaagcgcaagtttttggcaattgaggattaggtacgaccgcagccacatccaca |
183 |
Q |
| |
|
| | ||||||||||||||||||||||| |||||||||| ||| |||||||| ||||| |
|
|
| T |
31016935 |
ttcacaaaagcgcaagtttttggcaattgaagattaggtactaccacagccacagccaca |
31016876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University